From a5d4b72b439b0df6eb75e865167963287e15ad23 Mon Sep 17 00:00:00 2001
From: Philipp Schlegel <observing@web.de>
Date: Tue, 9 Jan 2024 18:23:54 +0000
Subject: [PATCH] fix geodesic_matrix when using networkx over igraph

---
 navis/graph/graph_utils.py | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/navis/graph/graph_utils.py b/navis/graph/graph_utils.py
index b9f2c226..6cff299b 100644
--- a/navis/graph/graph_utils.py
+++ b/navis/graph/graph_utils.py
@@ -682,6 +682,10 @@ def geodesic_matrix(x: 'core.NeuronObject',
         indices = None
         ix = nodeList
 
+    # For some reason csgrpah.dijkstra expects indices/indptr as int32
+    # igraph seems to do that by default but networkx uses int64 for indices
+    m.indptr = m.indptr.astype('int32', copy=False)
+    m.indices = m.indices.astype('int32', copy=False)
     dmat = csgraph.dijkstra(m,
                             directed=directed,
                             indices=indices,