From 277e1368a825be4ffe3cb2d04943f0f94119110b Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Thu, 9 Jan 2025 11:36:29 +0100 Subject: [PATCH] Use gtdb r220 in full test --- conf/test_full.config | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/conf/test_full.config b/conf/test_full.config index 5db195fe..dcf64c01 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -22,8 +22,7 @@ params { //centrifuge_db = "s3://ngi-igenomes/test-data/mag/p_compressed+h+v.tar.gz" kraken2_db = "s3://ngi-igenomes/test-data/mag/minikraken_8GB_202003.tgz" cat_db = "s3://ngi-igenomes/test-data/mag/CAT_prepare_20210107.tar.gz" - // gtdb_db = "s3://ngi-igenomes/test-data/mag/gtdbtk_r214_data.tar.gz" ## This should be updated to release 220, once we get GTDB-Tk working again - skip_gtdbtk = true + gtdb_db = "s3://ngi-igenomes/test-data/mag/gtdbtk_r220_data.tar.gz" // TODO TEMPORARY: deactivate SPAdes due to incompatibility of container with fusion file system skip_spades = true