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modules.json
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{
"name": "nf-core/phageannotator",
"homePage": "https://github.com/nf-core/phageannotator",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bacphlip": {
"branch": "master",
"git_sha": "9ca62539bfc7660e4943134d1c3cc63410ba01a9",
"installed_by": ["modules"]
},
"blast/blastn": {
"branch": "master",
"git_sha": "209e5a3e2753c5e628736a662c877c20f341ee15",
"installed_by": ["modules"]
},
"blast/makeblastdb": {
"branch": "master",
"git_sha": "a01c66c96e0bc610ad126e7adc4a94cd4acd1b48",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "0fe30831abbc2ed115e46e92330edf38f56edc3d",
"installed_by": ["fastq_align_bowtie2"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "9437e6053dccf4aafa022bfd6e7e9de67e625af8",
"installed_by": ["modules"]
},
"checkv/downloaddatabase": {
"branch": "master",
"git_sha": "56cf5a89c2646ad50195635cf18df4028a6928ce",
"installed_by": ["modules"]
},
"checkv/endtoend": {
"branch": "master",
"git_sha": "56cf5a89c2646ad50195635cf18df4028a6928ce",
"installed_by": ["modules"],
"patch": "modules/nf-core/checkv/endtoend/checkv-endtoend.diff"
},
"cobrameta": {
"branch": "master",
"git_sha": "647fb8e703ef352161eac8791ac0468e4727c4f7",
"installed_by": ["modules"],
"patch": "modules/nf-core/cobrameta/cobrameta.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
"installed_by": ["modules"]
},
"genomad/download": {
"branch": "master",
"git_sha": "9b68cbd01a704aaf2c34f6d6bc7c25e9b4670147",
"installed_by": ["modules"]
},
"genomad/endtoend": {
"branch": "master",
"git_sha": "9b68cbd01a704aaf2c34f6d6bc7c25e9b4670147",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
"installed_by": ["modules"]
},
"instrain/compare": {
"branch": "master",
"git_sha": "9c070598b0d23b9ecba0d76b7749728855150f10",
"installed_by": ["modules"]
},
"instrain/profile": {
"branch": "master",
"git_sha": "9c070598b0d23b9ecba0d76b7749728855150f10",
"installed_by": ["modules"]
},
"iphop/download": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"iphop/predict": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"mash/screen": {
"branch": "master",
"git_sha": "10f1f6526942539d5368cedb05afd1aa16eda5be",
"installed_by": ["modules"]
},
"mash/sketch": {
"branch": "master",
"git_sha": "10f1f6526942539d5368cedb05afd1aa16eda5be",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"pharokka/installdatabases": {
"branch": "master",
"git_sha": "10e88ef2f1f3ff012a2c9562de95c264006ebf21",
"installed_by": ["modules"]
},
"pharokka/pharokka": {
"branch": "master",
"git_sha": "10e88ef2f1f3ff012a2c9562de95c264006ebf21",
"installed_by": ["modules"],
"patch": "modules/nf-core/pharokka/pharokka/pharokka-pharokka.diff"
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"untar": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
"installed_by": ["fastq_align_bowtie2"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_align_bowtie2": {
"branch": "master",
"git_sha": "55e7bb6d5279ec21f254bbab0943117cb3d2fc35",
"installed_by": ["subworkflows"]
},
"initialise": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}