diff --git a/bin/read_data.py b/bin/read_data.py index 61eec91..50ac98e 100755 --- a/bin/read_data.py +++ b/bin/read_data.py @@ -41,7 +41,9 @@ # Read Visium data spatialdata = spatialdata_io.visium( - args.SRCountDir, counts_file="raw_feature_bc_matrix.h5", dataset_id=args.sampleID + args.SRCountDir, + counts_file="raw_feature_bc_matrix.h5", + dataset_id=args.sampleID, ) # Write raw spatialdata to file