From c3d41d44769a0639c854a165801ad42934ed3672 Mon Sep 17 00:00:00 2001 From: Jasmine Belfiore <166385424+JABelfiore@users.noreply.github.com> Date: Thu, 5 Dec 2024 14:41:42 +0000 Subject: [PATCH] 2839 ntr smooth muscle cell of stomach (#2840) * Smooth muscle cell of stomach definition, description and refs added * ref edit * style update * partonomy update to stomach muscularis externa --- src/ontology/cl-edit.owl | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ecb95e708..401e04824 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3104,6 +3104,7 @@ Declaration(Class(obo:CL_4047025)) Declaration(Class(obo:CL_4047029)) Declaration(Class(obo:CL_4047030)) Declaration(Class(obo:CL_4047032)) +Declaration(Class(obo:CL_4047034)) Declaration(Class(obo:CL_4047051)) Declaration(Class(obo:CL_4047052)) Declaration(Class(obo:CL_4047101)) @@ -31164,8 +31165,8 @@ EquivalentClasses(obo:CL_4030033 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeV AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18757316") Annotation(oboInOwl:hasDbXref "PMID:21364219") Annotation(oboInOwl:hasDbXref "PMID:34044844") Annotation(oboInOwl:hasDbXref "PMID:37834236") obo:IAO_0000115 obo:CL_4030034 "A multiciliated epithelial cell located in the respiratory tract epithelium, characterized by a columnar shape and motile cilia on its apical surface. This cell develops through a highly orchestrated process, transitioning from a basal progenitor via an intermediate deuterosomal cell stage that generates centrioles essential for ciliogenesis.") AnnotationAssertion(terms:date obo:CL_4030034 "2023-01-25T11:06:01Z"^^xsd:dateTime) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "ciliated cell of the respiratory tract") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory multiciliated cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory ciliated cell") +AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "respiratory multiciliated cell") AnnotationAssertion(rdfs:label obo:CL_4030034 "respiratory tract multiciliated cell") EquivalentClasses(obo:CL_4030034 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) SubClassOf(obo:CL_4030034 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033044)) @@ -33012,6 +33013,15 @@ SubClassOf(obo:CL_4047032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0001816)) SubClassOf(obo:CL_4047032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032940)) SubClassOf(obo:CL_4047032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045765)) +# Class: obo:CL_4047034 (smooth muscle cell of stomach) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:21443757") Annotation(oboInOwl:hasDbXref "PMID:33630273") obo:IAO_0000115 obo:CL_4047034 "A smooth muscle cell that is part of the muscularis externa of the stomach wall. It is characterized by its fusiform shape, involuntary control, and ability to generate slow, sustained contractions. This cell is organized in distinct layers and is essential for gastric motility and digestion.") +AnnotationAssertion(terms:contributor obo:CL_4047034 ) +AnnotationAssertion(terms:date obo:CL_4047034 "2024-12-05T11:10:18Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4047034 "smooth muscle cell of stomach"@en) +SubClassOf(obo:CL_4047034 obo:CL_0000192) +SubClassOf(obo:CL_4047034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008856)) + # Class: obo:CL_4047051 (small intestine BEST4+ enterocyte) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24223998") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047051 "An enterocyte of the human small intestine expressing bestrophin-4 (BEST4) calcium-activated ion channels. These enterocytes have a disinctive transcriptomic profile and are scattered through the small intestine epithelium.")