europe-custom.yaml.lock

install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: mimodd_main
  owner: wolma
  revisions:
  - f0f2795de2c7
  tool_panel_section_label: MiModD
- name: dwt_var_perfeature
  owner: devteam
  revisions:
  - 7a15159140d1
  tool_panel_section_label: Statistics
- name: bedtools
  owner: iuc
  revisions:
  - 07e8b80f278c
  - 0a5c785ac6db
  - 3e38c9b3214f
  - 4f7a5ccd2ae9
  - 589e7e57fd6d
  - 7ab85ac5f64b
  - 87ee588b3d45
  - a68aa6c1204a
  - b28e0cfa7ba1
  - b8348686a0b9
  - ce3c7f062223
  - dde39ba9c031
  - fe5b4cb8356c
  tool_panel_section_label: BED
- name: pizzly
  owner: iuc
  revisions:
  - 91ef4a171202
  - f7556cfa4047
  tool_panel_section_label: RNA Analysis
- name: mlocarna
  owner: rnateam
  revisions:
  - 59055c49a112
  tool_panel_section_label: RNA Analysis
- name: rcas
  owner: rnateam
  revisions:
  - aa9579837a2e
  tool_panel_section_label: RNA Analysis
- name: paralyzer
  owner: rnateam
  revisions:
  - 4dbe81be8b81
  tool_panel_section_label: RNA Analysis
- name: ebi_search_rest_results
  owner: iuc
  revisions:
  - 42d5e40fcd0b
  tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
  owner: iuc
  revisions:
  - a1ef6c88ee37
  - e2e9fae080ad
  tool_panel_section_label: Get Data
- name: transformation
  owner: ethevenot
  revisions:
  - d9e05021553c
  tool_panel_section_label: Statistics
- name: anova
  owner: lecorguille
  revisions:
  - bcd05315efc5
  tool_panel_section_label: Statistics
- name: heatmap
  owner: ethevenot
  revisions:
  - db1d80e89156
  tool_panel_section_label: Statistics
- name: univariate
  owner: ethevenot
  revisions:
  - 140290de7986
  tool_panel_section_label: Statistics
- name: multivariate
  owner: ethevenot
  revisions:
  - e91de3b04320
  tool_panel_section_label: Statistics
- name: biosigner
  owner: ethevenot
  revisions:
  - b2414be87d4b
  tool_panel_section_label: Statistics
- name: probmetab
  owner: mmonsoor
  revisions:
  - 52b222a626b0
  tool_panel_section_label: Annotation
- name: lcmsmatching
  owner: prog
  revisions:
  - fb9c0409d85c
  tool_panel_section_label: Annotation
- name: add_input_name_as_column
  owner: mvdbeek
  revisions:
  - b31219f26a8f
  tool_panel_section_label: Text Manipulation
- name: taxonomy_krona_chart
  owner: crs4
  revisions:
  - 020b3087d0b7
  tool_panel_section_label: NCBI Blast
- name: text_processing
  owner: bgruening
  revisions:
  - 20344ce0c811
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: uniprotxml_downloader
  owner: galaxyp
  revisions:
  - e1abc9a35c64
  tool_panel_section_label: Get Data
- name: sra_tools
  owner: iuc
  revisions:
  - 1790dcf3c32d
  - 26b7446bb17e
  - 494b2ec08162
  - 4df8de2d0e48
  - 653e89d73fc4
  - 69ebb7f46e45
  - 7068f48d0ef9
  - 751a694ec620
  - 83c7d564b128
  - aad3885b3216
  - b723c120161a
  - c441583adae5
  - e08a7ad4378b
  - f5ea3ce9b9b0
  tool_panel_section_label: Get Data
- name: ega_download_streamer
  owner: yhoogstrate
  revisions:
  - 3e2cccf08053
  tool_panel_section_label: Get Data
- name: dorina
  owner: rnateam
  revisions:
  - 6986169fa312
  tool_panel_section_label: Get Data
- name: dbbuilder
  owner: galaxyp
  revisions:
  - a85fbebe8b2f
  tool_panel_section_label: Get Data
- name: unipept
  owner: galaxyp
  revisions:
  - 34758ab8aaa4
  tool_panel_section_label: Get Data
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 1ee282794de3
  - 654b3a274ed5
  - 6b865dde1baa
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
  - 745871c0b055
  tool_panel_section_label: Text Manipulation
- name: split_file_on_column
  owner: bgruening
  revisions:
  - 90b52d8d6f2c
  tool_panel_section_label: Text Manipulation
- name: merge_cols
  owner: devteam
  revisions:
  - f2aac0c5c60d
  tool_panel_section_label: Text Manipulation
- name: text_processing
  owner: bgruening
  revisions:
  - 20344ce0c811
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
  - bc9c66c1e9c9
  tool_panel_section_label: Text Manipulation
- name: regex_replace
  owner: kellrott
  revisions:
  - 9a77d5fca67c
  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
  - 82fa5062d611
  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
  - 0926c81f382c
  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
  - 8ddabc73af92
  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
  - 8307665c4b6c
  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
  - ffbd1de29c28
  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
  - 765ceb06c3e2
  tool_panel_section_label: Text Manipulation
- name: get_flanks
  owner: devteam
  revisions:
  - 4cd116158aef
  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
  - e0a23ab32d7f
  tool_panel_section_label: Text Manipulation
- name: subtract
  owner: devteam
  revisions:
  - 7a2a604ae9c8
  tool_panel_section_label: Text Manipulation
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  tool_panel_section_label: Text Manipulation
- name: subtract_query
  owner: devteam
  revisions:
  - 960d5d114184
  tool_panel_section_label: Text Manipulation
- name: sed_wrapper
  owner: bjoern-gruening
  revisions:
  - 12ac67b5c81d
  tool_panel_section_label: Text Manipulation
- name: unique
  owner: bgruening
  revisions:
  - 7ce75adb93be
  tool_panel_section_label: Text Manipulation
- name: dna_filtering
  owner: devteam
  revisions:
  - 549d2cb4c6f2
  tool_panel_section_label: Text Manipulation
- name: column_arrange_by_header
  owner: bgruening
  revisions:
  - f18f67056946
  tool_panel_section_label: Filter and Sort
- name: seq_filter_by_id
  owner: peterjc
  revisions:
  - fb1313d79396
  tool_panel_section_label: Filter and Sort
- name: find_in_reference
  owner: jjohnson
  revisions:
  - c4fd2ea4f988
  tool_panel_section_label: Filter and Sort
- name: sample_seqs
  owner: peterjc
  revisions:
  - 02c13ef1a669
  tool_panel_section_label: Filter and Sort
- name: collection_column_join
  owner: iuc
  revisions:
  - 071084070619
  - 3ddd99c7efee
  - 58228a4d58fe
  - 9c8536c7ed42
  - dfde09461b1e
  tool_panel_section_label: Join, Subtract and Group
- name: subtract
  owner: devteam
  revisions:
  - 7a2a604ae9c8
  tool_panel_section_label: Join, Subtract and Group
- name: bam_to_scidx
  owner: iuc
  revisions:
  - 11fc60f0e942
  - 408520e1ae1a
  - b737f6d83f48
  tool_panel_section_label: Convert Formats
- name: map_peptides_to_bed
  owner: galaxyp
  revisions:
  - 78b8213e122d
  tool_panel_section_label: Convert Formats
- name: idconvert
  owner: galaxyp
  revisions:
  - edb33e8224c6
  tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
  owner: iuc
  revisions:
  - 08b6255afde7
  - 4eb3cc1f8466
  - 541f300f322d
  - 9ba78e8985dc
  tool_panel_section_label: Convert Formats
- name: uniprot_rest_interface
  owner: bgruening
  revisions:
  - 48522382b6a4
  tool_panel_section_label: Convert Formats
- name: bigwig_to_bedgraph
  owner: bgruening
  revisions:
  - 3799012ce2ff
  tool_panel_section_label: Convert Formats
- name: gffread
  owner: devteam
  revisions:
  - 0232f19d300f
  tool_panel_section_label: Convert Formats
- name: msconvert
  owner: galaxyp
  revisions:
  - dd4ba10d0c45
  tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
  owner: devteam
  revisions:
  - 0b4e36026794
  tool_panel_section_label: FASTA/FASTQ
- name: fasta_to_tabular
  owner: devteam
  revisions:
  - 7e801ab2b70e
  tool_panel_section_label: FASTA/FASTQ
- name: fastqtofasta
  owner: devteam
  revisions:
  - 723b5b38d88a
  tool_panel_section_label: FASTQ Quality Control
- name: fastq_to_fasta
  owner: devteam
  revisions:
  - 186b8d913e6c
  tool_panel_section_label: FASTQ Quality Control
- name: length_and_gc_content
  owner: iuc
  revisions:
  - 2ca1baabdae0
  - e3ba567abdf5
  - f088370d2a3c
  tool_panel_section_label: Extract Features
- name: extract_genomic_dna
  owner: iuc
  revisions:
  - 5cc8e93ee98f
  - 8dd8e89c0603
  - c8467246b57e
  - e1f5bdd8279c
  - e400dcbc60d0
  tool_panel_section_id: fetch_sequences___alignments
- name: concat
  owner: devteam
  revisions:
  - d491589307e7
  tool_panel_section_label: Operate on Genomic Intervals
- name: complement
  owner: devteam
  revisions:
  - e0a23ab32d7f
  tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
  owner: devteam
  revisions:
  - 765ceb06c3e2
  tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
  owner: devteam
  revisions:
  - 3b33da018e74
  tool_panel_section_label: Operate on Genomic Intervals
- name: numeric_clustering
  owner: bgruening
  revisions:
  - a3fd214e7555
  tool_panel_section_label: Statistics
- name: t_test_two_samples
  owner: devteam
  revisions:
  - c2ffc9885b5a
  tool_panel_section_label: Statistics
- name: seq_composition
  owner: peterjc
  revisions:
  - c0eb0e5792f3
  tool_panel_section_label: Statistics
- name: plot_from_lda
  owner: devteam
  revisions:
  - 08affc5d2aef
  tool_panel_section_label: Statistics
- name: mine
  owner: devteam
  revisions:
  - 5e2c89443c44
  tool_panel_section_label: Statistics
- name: lda_analysis
  owner: devteam
  revisions:
  - f0b6217f4a0c
  tool_panel_section_label: Statistics
- name: generate_pc_lda_matrix
  owner: devteam
  revisions:
  - 04cdbd00dcec
  tool_panel_section_label: Statistics
- name: count_gff_features
  owner: devteam
  revisions:
  - fabda887a71f
  tool_panel_section_label: Statistics
- name: correlation
  owner: devteam
  revisions:
  - 24e01abf9e34
  tool_panel_section_label: Statistics
- name: fasta_nucleotide_color_plot
  owner: iuc
  revisions:
  - 0fba45ac3987
  - 980917b09eb8
  - e4b5401adcec
  tool_panel_section_label: Graph/Display Data
- name: jbrowse
  owner: iuc
  revisions:
  - 0ae74c70b267
  - 17359b808b01
  - 1cfc579079a6
  - 2bb2e07a7a21
  - 2c9e5136b416
  - 3235aeb45c22
  - 4542035c1075
  - 667e17248bfe
  - 69c5e9c0add0
  - 6b774e9d6387
  - 6cd09d7b5f37
  - 8774b28235bb
  - 9de82b4963e6
  - a6e57ff585c0
  - ca2def38369c
  - d0743cb18ed8
  - dba3c47e1798
  - edb534491f92
  - fa30df9b79c2
  - fd5dbf0f732e
  tool_panel_section_label: Graph/Display Data
- name: venn_list
  owner: peterjc
  revisions:
  - 20d347feb882
  - e13206029a72
  tool_panel_section_label: Graph/Display Data
- name: mummer
  owner: peterjc
  revisions:
  - d9f3d4779507
  tool_panel_section_label: Graph/Display Data
- name: karyotype_plot
  owner: guru-ananda
  revisions:
  - d810aa84ee6a
  tool_panel_section_label: Graph/Display Data
- name: ucsc_custom_track
  owner: devteam
  revisions:
  - 760f588e8a26
  tool_panel_section_label: Graph/Display Data
- name: scatterplot
  owner: devteam
  revisions:
  - efda9a4a50e7
  tool_panel_section_label: Graph/Display Data
- name: histogram
  owner: devteam
  revisions:
  - cdb9e89e2970
  tool_panel_section_label: Graph/Display Data
- name: gmaj
  owner: devteam
  revisions:
  - 2cd5ee197ec7
  tool_panel_section_label: Graph/Display Data
- name: xy_plot
  owner: devteam
  revisions:
  - 319fa5a9fc1b
  tool_panel_section_label: Graph/Display Data
- name: featurecounter
  owner: devteam
  revisions:
  - ac6218e2b686
  tool_panel_section_label: Regional Variation
- name: indels_3way
  owner: devteam
  revisions:
  - 5ad24b81dd10
  tool_panel_section_label: Regional Variation
- name: draw_stacked_barplots
  owner: devteam
  revisions:
  - e997b710e38a
  tool_panel_section_label: Regional Variation
- name: delete_overlapping_indels
  owner: devteam
  revisions:
  - f16000dc644b
  tool_panel_section_label: Regional Variation
- name: compute_motifs_frequency
  owner: devteam
  revisions:
  - 1f8ee7f9701b
  tool_panel_section_label: Regional Variation
- name: compute_motif_frequencies_for_all_motifs
  owner: devteam
  revisions:
  - 5319efa51514
  tool_panel_section_label: Regional Variation
- name: categorize_elements_satisfying_criteria
  owner: devteam
  revisions:
  - 586c1f0e1515
  tool_panel_section_label: Regional Variation
- name: best_regression_subsets
  owner: devteam
  revisions:
  - 4f33ec73e445
  tool_panel_section_label: Statistics
- name: principal_component_analysis
  owner: devteam
  revisions:
  - f568051cdf2e
  tool_panel_section_label: Statistics
- name: kernel_principal_component_analysis
  owner: devteam
  revisions:
  - 3d58aa83e4a3
  tool_panel_section_label: Statistics
- name: kernel_canonical_correlation_analysis
  owner: devteam
  revisions:
  - 5ce5a2adb875
  tool_panel_section_label: Statistics
- name: canonical_correlation_analysis
  owner: devteam
  revisions:
  - 9bc0c48a027f
  tool_panel_section_label: Statistics
- name: mutate_snp_codon
  owner: devteam
  revisions:
  - 8f0af7251167
  tool_panel_section_label: Evolution
- name: meme_meme
  owner: iuc
  revisions:
  - 19237efe98d1
  - 3f0dd362b755
  - 57e5d9382f36
  - 9dd5373f6a5a
  - d20e391eb22f
  - e7242484929c
  - e8b209806a20
  tool_panel_section_label: Motif Tools
- name: meme_fimo
  owner: iuc
  revisions:
  - 0c5239d1aa65
  - 40b8472e91ca
  - c1a9a297ba8b
  - c5209f38700d
  - d7a6ea1e3b9d
  - fd522a964017
  tool_panel_section_label: Motif Tools
- name: weblogo3
  owner: devteam
  revisions:
  - c1a9e644d580
  tool_panel_section_label: Motif Tools
- name: muscle
  owner: crs4
  revisions:
  - 533b3b2a1e66
  tool_panel_section_label: Multiple Alignments
- name: mafft
  owner: rnateam
  revisions:
  - d71e007323d4
  tool_panel_section_label: Multiple Alignments
- name: hammock
  owner: hammock
  revisions:
  - 4db310b7e37c
  tool_panel_section_label: Multiple Alignments
- name: compalignp
  owner: rnateam
  revisions:
  - 7e55ac3bd458
  tool_panel_section_label: Multiple Alignments
- name: mafft
  owner: rnateam
  revisions:
  - d71e007323d4
  tool_panel_section_label: Multiple Alignments
- name: clustalw
  owner: devteam
  revisions:
  - d6694932c5e0
  tool_panel_section_label: Multiple Alignments
- name: vegan_diversity
  owner: iuc
  revisions:
  - a2c047a2c380
  - c58e19ff504a
  - db56c8e79b1e
  tool_panel_section_label: Metagenomic Analysis
- name: vegan_fisher_alpha
  owner: iuc
  revisions:
  - a5a453f92273
  - d6b92ca3a9a1
  - f9966e11885b
  tool_panel_section_label: Metagenomic Analysis
- name: vegan_rarefaction
  owner: iuc
  revisions:
  - 3d1d965b6423
  - b0d5976540e3
  - dd2705a31239
  tool_panel_section_label: Metagenomic Analysis
- name: vsearch
  owner: iuc
  revisions:
  - 576963db5f1b
  - 9495df9dd6ef
  - b3c7199d8786
  - fae6527990af
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_filter_abundance
  owner: iuc
  revisions:
  - 8c6433857aa8
  - 97f65399e30d
  - a4970dfc331c
  - dbe616d126b1
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_filter_below_abundance_cutoff
  owner: iuc
  revisions:
  - 569001af897d
  - b469ab47b490
  - bf716cfc3225
  - d9cc87dfec6e
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_extract_partitions
  owner: iuc
  revisions:
  - 2c763fb18010
  - 518ba4a77274
  - 7d8138b4a593
  - 98b53d46e851
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_abundance_distribution
  owner: iuc
  revisions:
  - 5a97c5bbd51e
  - a02efb62565b
  - c0caca5af183
  - e0de12ae3fc2
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_count_median
  owner: iuc
  revisions:
  - 06d1d91c67e5
  - 5efc5f21d0c1
  - 77410799e8e9
  - 7aa811aa3b93
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_partition
  owner: iuc
  revisions:
  - 766ec3dad7ff
  - b7429b53be2a
  - c393687bd857
  - e562293ee5ec
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_normalize_by_median
  owner: iuc
  revisions:
  - 557cc16931f4
  - bfd859f04a89
  - e84073b420a8
  - f0290a079720
  tool_panel_section_label: Metagenomic Analysis
- name: khmer_abundance_distribution_single
  owner: iuc
  revisions:
  - 09c6a051c5fd
  - 55109291a355
  - 792d520ba676
  - c018a72b523e
  tool_panel_section_label: Metagenomic Analysis
- name: t2t_report
  owner: devteam
  revisions:
  - 592acb9505fc
  tool_panel_section_label: Metagenomic Analysis
- name: t2ps
  owner: devteam
  revisions:
  - 4d9910e996f7
  tool_panel_section_label: Metagenomic Analysis
- name: poisson2test
  owner: devteam
  revisions:
  - 5ff18ec88181
  tool_panel_section_label: Metagenomic Analysis
- name: lca_wrapper
  owner: devteam
  revisions:
  - 33e8ed5a4601
  tool_panel_section_label: Metagenomic Analysis
- name: gi2taxonomy
  owner: devteam
  revisions:
  - 7b1b03c4465d
  tool_panel_section_label: Metagenomic Analysis
- name: find_diag_hits
  owner: devteam
  revisions:
  - acf51ff24c7d
  tool_panel_section_label: Metagenomic Analysis
- name: fasta_merge_files_and_filter_unique_sequences
  owner: galaxyp
  revisions:
  - 9ad0d336e5ed
  tool_panel_section_label: FASTA/FASTQ
- name: lighter
  owner: bgruening
  revisions:
  - 89b453176d05
  tool_panel_section_label: FASTA/FASTQ
- name: sickle
  owner: iuc
  revisions:
  - 3905ccd5c631
  - 6756c87dc2d4
  - edaa8572219d
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_interlacer
  owner: devteam
  revisions:
  - ec6ddf449651
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_joiner
  owner: devteam
  revisions:
  - 6a7f5da7c76d
  tool_panel_section_label: FASTA/FASTQ
- name: fasta_compute_length
  owner: devteam
  revisions:
  - de2db1bdfbf8
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_join
  owner: lparsons
  revisions:
  - 8ec3dfde378b
  tool_panel_section_label: FASTA/FASTQ
- name: splitfasta
  owner: rnateam
  revisions:
  - ae4d5733272f
  tool_panel_section_label: FASTA/FASTQ
- name: je_clip
  owner: gbcs-embl-heidelberg
  revisions:
  - 8b4ccdf5f7dd
  tool_panel_section_label: FASTA/FASTQ
- name: je_demultiplex
  owner: gbcs-embl-heidelberg
  revisions:
  - 6da7b7886cbf
  tool_panel_section_label: FASTA/FASTQ
- name: je_demultiplex_illu
  owner: gbcs-embl-heidelberg
  revisions:
  - 69c77f9fc064
  tool_panel_section_label: FASTA/FASTQ
- name: je_markdupes
  owner: gbcs-embl-heidelberg
  revisions:
  - 384b972e43bc
  tool_panel_section_label: FASTA/FASTQ
- name: align_back_trans
  owner: peterjc
  revisions:
  - 9fbf29a8c12b
  tool_panel_section_label: FASTA/FASTQ
- name: seq_filter_by_mapping
  owner: peterjc
  revisions:
  - 8ff0ac66f1a3
  tool_panel_section_label: FASTA/FASTQ
- name: pear
  owner: iuc
  revisions:
  - 240f611a46f3
  - 2f804526f5fd
  - 581e52f03c5d
  - b4c6f054210a
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_artifacts_filter
  owner: devteam
  revisions:
  - 09070cacefd8
  tool_panel_section_label: FASTQ Quality Control
- name: fastx_barcode_splitter
  owner: devteam
  revisions:
  - 8abdedf55101
  tool_panel_section_label: FASTQ Quality Control
- name: fastx_clipper
  owner: devteam
  revisions:
  - bdf1ce174e39
  tool_panel_section_label: FASTQ Quality Control
- name: fastx_nucleotides_distribution
  owner: devteam
  revisions:
  - 63d6e2daad48
  tool_panel_section_label: FASTQ Quality Control
- name: fasta_filter_by_length
  owner: devteam
  revisions:
  - c8cd0a03db49
  tool_panel_section_label: FASTA/FASTQ
- name: fasta_concatenate_by_species
  owner: devteam
  revisions:
  - 717aee069681
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_collapser
  owner: devteam
  revisions:
  - 421f0af4ee95
  tool_panel_section_label: FASTQ Quality Control
- name: fasta_nucleotide_changer
  owner: devteam
  revisions:
  - f81d4362b6c1
  tool_panel_section_label: FASTA/FASTQ
- name: fasta_formatter
  owner: devteam
  revisions:
  - 9457a20156db
  tool_panel_section_label: FASTA/FASTQ
- name: trim_galore
  owner: bgruening
  revisions:
  - 949f01671246
  tool_panel_section_label: FASTQ Quality Control
- name: fastqc
  owner: devteam
  revisions:
  - 484e86282f4b
  tool_panel_section_label: FASTQ Quality Control
- name: trimmomatic
  owner: pjbriggs
  revisions:
  - 415a165d92bb
  tool_panel_section_label: FASTA/FASTQ
- name: cutadapt
  owner: lparsons
  revisions:
  - 01d94df2e32a
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_joiner
  owner: devteam
  revisions:
  - 6a7f5da7c76d
  tool_panel_section_label: FASTA/FASTQ
- name: short_reads_trim_seq
  owner: devteam
  revisions:
  - 25e6fe525306
  tool_panel_section_label: FASTA/FASTQ
- name: short_reads_figure_score
  owner: devteam
  revisions:
  - b52b9c7aabd9
  tool_panel_section_label: FASTA/FASTQ
- name: tabular_to_fastq
  owner: devteam
  revisions:
  - 92034dcbb40a
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_trimmer_by_quality
  owner: devteam
  revisions:
  - 25c24379693a
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_trimmer
  owner: devteam
  revisions:
  - e0cfb5a703ce
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_to_tabular
  owner: devteam
  revisions:
  - 7da7ddea4425
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_stats
  owner: devteam
  revisions:
  - daaf552153fe
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_splitter
  owner: devteam
  revisions:
  - c80bce242eec
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_interlacer
  owner: devteam
  revisions:
  - ec6ddf449651
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_paired_end_deinterlacer
  owner: devteam
  revisions:
  - f0949bc49926
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_masker_by_quality
  owner: devteam
  revisions:
  - 9d234265981e
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_manipulation
  owner: devteam
  revisions:
  - bb07615a5b6a
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_groomer
  owner: devteam
  revisions:
  - e4d28c94242d
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_filter
  owner: devteam
  revisions:
  - b957f55f3955
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_combiner
  owner: devteam
  revisions:
  - e711d52c7509
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_trimmer
  owner: devteam
  revisions:
  - 377ac2829eac
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_reverse_complement
  owner: devteam
  revisions:
  - e246088b6e34
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_renamer
  owner: devteam
  revisions:
  - 02f8a17a4ebd
  tool_panel_section_label: FASTA/FASTQ
- name: fastx_quality_statistics
  owner: devteam
  revisions:
  - 7306ec78632a
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_quality_filter
  owner: devteam
  revisions:
  - e41385662e5e
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_quality_converter
  owner: devteam
  revisions:
  - 74db4cffab1f
  tool_panel_section_label: FASTA/FASTQ
- name: fastq_quality_boxplot
  owner: devteam
  revisions:
  - f95284aa2946
  tool_panel_section_label: FASTA/FASTQ
- name: multiqc
  owner: iuc
  revisions:
  - 161f4383df15
  - 1c2db0054039
  - 3d93dd18d9f8
  - 5e33b465d8d5
  - 75c93c70d094
  - 9a913cdee30e
  - abfd8a6544d7
  - b2f1f75d49c4
  - bf675f34b056
  - c19b16e5729c
  - f7985e0479b9
  tool_panel_section_label: Quality Control
- name: mira_assembler
  owner: peterjc
  revisions:
  - 63ebe9726219
  tool_panel_section_label: Assembly
- name: spades
  owner: lionelguy
  revisions:
  - 21734680d921
  tool_panel_section_label: Assembly
- name: rnaspades
  owner: iuc
  revisions:
  - 03fd468e158f
  - 0d30fed9628b
  - 1035adb112c0
  - 16e0eb91072f
  - 1d06c8b38e77
  - 378e55aeeb25
  - 53c2bc8c2ae3
  - 675ee1aa5952
  - 9e58ff014088
  - a8a278849c18
  - b66de1e9abfb
  - e122f9101584
  - ef69617ecb42
  tool_panel_section_label: Assembly
- name: sopra
  owner: crs4
  revisions:
  - 87ffe493b6c1
  tool_panel_section_label: Assembly
- name: ssake
  owner: crs4
  revisions:
  - f20db7280f89
  tool_panel_section_label: Assembly
- name: crispr_recognition_tool
  owner: bgruening
  revisions:
  - db0f5c1cb227
  tool_panel_section_label: Assembly
- name: minced
  owner: bgruening
  revisions:
  - e8cbdbc4de58
  tool_panel_section_label: Assembly
- name: edena
  owner: crs4
  revisions:
  - b8c6a38530eb
  tool_panel_section_label: Assembly
- name: tophat2
  owner: devteam
  revisions:
  - 16c4255042be
  tool_panel_section_label: Mapping
- name: bowtie2
  owner: devteam
  revisions:
  - a9d4f71dbfb0
  tool_panel_section_label: Mapping
- name: rgrnastar
  owner: iuc
  revisions:
  - 0a563fd2f22e
  - 318b2a9d54dd
  - 4074fc1940e2
  - 41929aa1e7f3
  - 44959aa06aeb
  - 4df95e2d7f61
  - 5ec75f5dae3c
  - 7ed2edc1337f
  - 850f3679b9b4
  - 980d2a2e1180
  - b9e04854e2bb
  - bc685d13b637
  - c772497b2c32
  - d5659efd66aa
  - d82339e37e8e
  - e132e7d02a3e
  tool_panel_section_label: Mapping
- name: hisat2
  owner: iuc
  revisions:
  - 0c16cad5e03b
  - 26371a1df031
  - 2ec097c8e843
  - 3fb01a8c902d
  - 6c19daec423d
  - 6d4d39720545
  - a86e80d3c09c
  - d4b55e2beb12
  - f4af63aaf57a
  tool_panel_section_label: Mapping
- name: bowtie_wrappers
  owner: devteam
  revisions:
  - b46e7d48076a
  tool_panel_section_label: Mapping
- name: bowtie_color_wrappers
  owner: devteam
  revisions:
  - a3825c73805c
  tool_panel_section_label: Mapping
- name: bwa_mem
  owner: crs4
  revisions:
  - ebb02ba5987c
  tool_panel_section_label: Mapping
- name: bwa_wrappers
  owner: devteam
  revisions:
  - b4427dbb6ced
  tool_panel_section_label: Mapping
- name: megablast_xml_parser
  owner: devteam
  revisions:
  - 03ca082aeb2e
  tool_panel_section_label: Mapping
- name: megablast_wrapper
  owner: devteam
  revisions:
  - fb2e0e1dac89
  tool_panel_section_label: Mapping
- name: lastz_paired_reads
  owner: devteam
  revisions:
  - ecc974513241
  tool_panel_section_label: Mapping
- name: lastz
  owner: devteam
  revisions:
  - 60afcc2c1d05
  tool_panel_section_label: Mapping
- name: sailfish
  owner: bgruening
  revisions:
  - a8f343909c17
  tool_panel_section_label: RNA Analysis
- name: deseq2
  owner: iuc
  revisions:
  - 0696db066a5b
  - 6a3a025714d3
  - 6f91b8ce6e07
  - 71bacea10eee
  - 7ff33c2d525b
  - 89d26b11d452
  - 8fe98f7094de
  - a6fc9228e1a0
  - cd9874cb9019
  - d027d1f4984e
  - d983d19fbbab
  - de44f8eff84a
  - e5c8afac22a7
  tool_panel_section_label: RNA Analysis
- name: salmon
  owner: bgruening
  revisions:
  - 5a60f347f566
  tool_panel_section_label: RNA Analysis
- name: featurecounts
  owner: iuc
  revisions:
  - 1759d845181e
  - 38b6d12edc68
  - 7db9d3ea71c9
  - 90d16db017d7
  - 9301937c9037
  - a37612abf7f9
  - a56fbe2d6ba7
  - af814359d244
  - c7bd0cc53524
  - ce44c6f2ba38
  - de2c5e5a206c
  - ea04b737afa0
  tool_panel_section_label: RNA Analysis
- name: circexplorer
  owner: bgruening
  revisions:
  - c3b5869b95fd
  tool_panel_section_label: RNA Analysis
- name: transdecoder
  owner: iuc
  revisions:
  - 0db979fead3a
  - 8aef9a17faae
  - c6334cb383ff
  - d0d4cef4f967
  - ffd1300599a1
  tool_panel_section_label: RNA Analysis
- name: trinity
  owner: iuc
  revisions:
  - 26d5493b20b6
  - 3772d9a10f27
  - 48636f857c4b
  - 5b60313a6ce7
  - 606b7748965d
  - c9cfec002f71
  - d2bc35f3d1c5
  - d5e8807a407d
  - d84caa5a98ad
  - db1f362cca3e
  - f7564c3f9dc0
  tool_panel_section_label: RNA Analysis
- name: vienna_rna
  owner: rnateam
  revisions:
  - 04c56f5b0907
  tool_panel_section_label: RNA Analysis
- name: remurna
  owner: rnateam
  revisions:
  - b1f5d49a6f30
  tool_panel_section_label: RNA Analysis
- name: rnasnp
  owner: rnateam
  revisions:
  - 327f5721612f
  tool_panel_section_label: RNA Analysis
- name: rnacommender
  owner: rnateam
  revisions:
  - b3462a72ff76
  tool_panel_section_label: RNA Analysis
- name: blockbuster
  owner: rnateam
  revisions:
  - 7c7ff7a3503f
  tool_panel_section_label: RNA Analysis
- name: tophat_fusion_post
  owner: devteam
  revisions:
  - f83394a2c2da
  tool_panel_section_label: RNA Analysis
- name: stringtie
  owner: iuc
  revisions:
  - 1ebd14235b92
  - 258d696dbd7e
  - 333a6e13b622
  - 62d212192002
  - 6e45b443ef1f
  - 914cfcba0ec8
  - ae618321f34a
  - cef79931dda5
  - dd4df992d93d
  - eba36e001f45
  tool_panel_section_label: RNA Analysis
- name: dexseq
  owner: iuc
  revisions:
  - 251393b72616
  - 278b189248cd
  - 2872c633f07e
  - 4ca0e679f21e
  - 62adf13b86ea
  - 9fd8b69e6e68
  - b47c006d90c5
  - f1c406f9554c
  tool_panel_section_label: RNA Analysis
- name: cuffdiff
  owner: devteam
  revisions:
  - d3ae7d9c2202
  tool_panel_section_label: RNA Analysis
- name: htseq_count
  owner: lparsons
  revisions:
  - 6e5c95760ab1
  tool_panel_section_label: RNA Analysis
- name: kinwalker
  owner: rnateam
  revisions:
  - cb66f1d643e4
  tool_panel_section_label: RNA Analysis
- name: antarna
  owner: rnateam
  revisions:
  - cfe9e6771518
  tool_panel_section_label: RNA Analysis
- name: rnabob
  owner: rnateam
  revisions:
  - cd00b4fe6552
  tool_panel_section_label: RNA Analysis
- name: structurefold
  owner: tyty
  revisions:
  - 7bb98e9296e9
  tool_panel_section_label: RNA Analysis
- name: rnashapes
  owner: rnateam
  revisions:
  - f33190f18ee6
  tool_panel_section_label: RNA Analysis
- name: rnacode
  owner: rnateam
  revisions:
  - 2c51e264432a
  tool_panel_section_label: RNA Analysis
- name: rnaz
  owner: bgruening
  revisions:
  - 8abf4c0a4af0
  tool_panel_section_label: RNA Analysis
- name: cummerbund_to_tabular
  owner: devteam
  revisions:
  - 0761bbc0a4e7
  tool_panel_section_label: RNA Analysis
- name: cummerbund
  owner: devteam
  revisions:
  - 78fcfc04fcfe
  tool_panel_section_label: RNA Analysis
- name: blockclust
  owner: rnateam
  revisions:
  - 6ecd674b5b62
  tool_panel_section_label: RNA Analysis
- name: segemehl
  owner: rnateam
  revisions:
  - 0da425524259
  tool_panel_section_label: RNA Analysis
- name: infernal
  owner: bgruening
  revisions:
  - c47a7c52ac4f
  tool_panel_section_label: RNA Analysis
- name: cuffmerge
  owner: devteam
  revisions:
  - cf747d1bd79a
  tool_panel_section_label: RNA Analysis
- name: cuffquant
  owner: devteam
  revisions:
  - 6dc45faebc1d
  tool_panel_section_label: RNA Analysis
- name: cuffnorm
  owner: devteam
  revisions:
  - f5b2ee725d34
  tool_panel_section_label: RNA Analysis
- name: cuffcompare
  owner: devteam
  revisions:
  - e66b9b5b8580
  tool_panel_section_label: RNA Analysis
- name: cufflinks
  owner: devteam
  revisions:
  - e04dbae2abe0
  tool_panel_section_label: RNA Analysis
- name: mirdeep2
  owner: rnateam
  revisions:
  - d0faf81ccc99
  tool_panel_section_label: RNA Analysis
- name: mirdeep2_quantifier
  owner: rnateam
  revisions:
  - 40dc77f3730c
  tool_panel_section_label: RNA Analysis
- name: mirdeep2_mapper
  owner: rnateam
  revisions:
  - ab8cd78709e1
  tool_panel_section_label: RNA Analysis
- name: rseqc
  owner: nilesh
  revisions:
  - f242ee103277
  tool_panel_section_label: RNA Analysis
- name: rsem
  owner: jjohnson
  revisions:
  - 14267d364365
  tool_panel_section_label: RNA Analysis
- name: filter_transcripts_via_tracking
  owner: devteam
  revisions:
  - 45f89dcf0b4c
  tool_panel_section_label: RNA Analysis
- name: express
  owner: devteam
  revisions:
  - 7b0708761d05
  tool_panel_section_label: RNA Analysis
- name: cufflinks
  owner: devteam
  revisions:
  - e04dbae2abe0
  tool_panel_section_label: RNA Analysis
- name: cuffcompare
  owner: devteam
  revisions:
  - e66b9b5b8580
  tool_panel_section_label: RNA Analysis
- name: macs2
  owner: iuc
  revisions:
  - 424aefbd7777
  - 640d3af5d833
  - 6d4babad010f
  - bfe57d6e0c4c
  tool_panel_section_label: Peak Calling
- name: diffbind
  owner: bgruening
  revisions:
  - 69138bfd8644
  tool_panel_section_label: Peak Calling
- name: piranha
  owner: rnateam
  revisions:
  - f7f366ede872
  tool_panel_section_label: Peak Calling
- name: macs
  owner: devteam
  revisions:
  - f6319b0b4391
  tool_panel_section_label: Peak Calling
- name: sicer
  owner: devteam
  revisions:
  - 4a14714649b4
  tool_panel_section_label: Peak Calling
- name: ccat
  owner: devteam
  revisions:
  - 201d8e7dfc43
  tool_panel_section_label: Peak Calling
- name: pileometh
  owner: bgruening
  revisions:
  - ccc755bdf11d
  tool_panel_section_label: Epigenetics
- name: bwameth
  owner: iuc
  revisions:
  - 29bdbc353f20
  - 62f5fab76dfb
  - 6da3972210ee
  - 95219305823a
  - a6ea26c1f225
  - b4e6819b25ef
  - f7094efef903
  tool_panel_section_label: Epigenetics
- name: metilene
  owner: rnateam
  revisions:
  - cd253831a014
  tool_panel_section_label: Epigenetics
- name: vcf_filter
  owner: devteam
  revisions:
  - da1a6f33b504
  tool_panel_section_label: Epigenetics
- name: varscan_version_2
  owner: devteam
  revisions:
  - bc1e0cd41241
  tool_panel_section_label: Variant Calling
- name: freebayes
  owner: devteam
  revisions:
  - da6e10dee68b
  tool_panel_section_label: Variant Calling
- name: vcf2pgsnp
  owner: devteam
  revisions:
  - 5fca46616675
  tool_panel_section_label: Phenotype Association
- name: snpfreq
  owner: devteam
  revisions:
  - 5c3ac057608b
  tool_panel_section_label: Phenotype Association
- name: hgv_hilbertvis
  owner: devteam
  revisions:
  - e1a9ad05dced
  tool_panel_section_label: Phenotype Association
- name: hgv_fundo
  owner: devteam
  revisions:
  - ca3fcd18dc3e
  tool_panel_section_label: Phenotype Association
- name: divide_pg_snp
  owner: devteam
  revisions:
  - f74fdfc17143
  tool_panel_section_label: Phenotype Association
- name: ctd_batch
  owner: devteam
  revisions:
  - 4a32700dcaa2
  tool_panel_section_label: Phenotype Association
- name: goseq
  owner: iuc
  revisions:
  - 07f6832bdd4d
  - 43798b4caee0
  - 602de62d995b
  - 67c29afac85f
  - 8b3e3657034e
  - 9d1256d9ef0b
  - ade933eff007
  - ae39895af5fe
  - bbcf5f7f2af2
  - ef2ad746b589
  tool_panel_section_label: Annotation
- name: kobas
  owner: iuc
  revisions:
  - 20f1b45dea63
  - 83b998fa34ea
  - b573ecb2ca66
  tool_panel_section_label: Annotation
- name: prokka
  owner: crs4
  revisions:
  - a17498c603ec
  tool_panel_section_label: Annotation
- name: nucleosome_prediction
  owner: bgruening
  revisions:
  - 2c42bb973ac3
  tool_panel_section_label: Annotation
- name: sortmerna
  owner: rnateam
  revisions:
  - 1eafcc450052
  tool_panel_section_label: Annotation
- name: snpsift_genesets
  owner: iuc
  revisions:
  - 9e6fa49c1077
  - d12a810c837e
  - ea2e7d299365
  tool_panel_section_label: Variant Calling
- name: miranda
  owner: tgac
  revisions:
  - bf6976462251
  tool_panel_section_label: Annotation
- name: hammock
  owner: hammock
  revisions:
  - 4db310b7e37c
  tool_panel_section_label: Annotation
- name: segmentation_fold
  owner: yhoogstrate
  revisions:
  - b7cf9b172cfe
  tool_panel_section_label: Annotation
- name: dotknot
  owner: bgruening
  revisions:
  - 42d20ff5da1b
  tool_panel_section_label: Annotation
- name: transtermhp
  owner: iuc
  revisions:
  - 012171ba9fce
  - 1d8ad7599f02
  - 9a90656a1af9
  tool_panel_section_label: Annotation
- name: blast2go
  owner: peterjc
  revisions:
  - e23b621eb7bb
  tool_panel_section_label: Annotation
- name: hmmer3
  owner: iuc
  revisions:
  - 54b6b4d0613a
  - b5066aa77fea
  tool_panel_section_label: Annotation
- name: find_subsequences
  owner: bgruening
  revisions:
  - d882a0a75759
  tool_panel_section_label: Annotation
- name: gotohscan
  owner: rnateam
  revisions:
  - 6845ddcd5588
  tool_panel_section_label: Annotation
- name: snpsift_dbnsfp
  owner: iuc
  revisions:
  - 4e21e4f2bc48
  - 563d1bdb7b80
  - dc480609d9c1
  tool_panel_section_label: Variant Calling
- name: snpsift
  owner: iuc
  revisions:
  - 09d6806c609e
  - 2b3e65a4252f
  - 2e497a770bca
  - 5fab4f81391d
  - 9e8280e19338
  - bf8c1526871b
  tool_panel_section_label: Variant Calling
- name: snpsift_dbnsfp_generic
  owner: iuc
  revisions:
  - 0624d484adba
  - a7cbaf3beadd
  tool_panel_section_label: Variant Calling
- name: snpeff
  owner: iuc
  revisions:
  - 268d162b9c49
  - 36dc3690a82c
  - 5b80f544c67f
  - 5c7b70713fb5
  - 74aebe30fb52
  - 8f92c2b26e6d
  - cfcf33df7fc0
  - de67e5082c48
  - e09ce114d240
  - e8adfc4c0a6b
  tool_panel_section_label: Variant Calling
- name: tmhmm_and_signalp
  owner: peterjc
  revisions:
  - 7de64c8b258d
  tool_panel_section_label: Annotation
- name: trna_prediction
  owner: bgruening
  revisions:
  - d788d1abe238
  tool_panel_section_label: Annotation
- name: antismash
  owner: bgruening
  revisions:
  - 5db064bbb3be
  tool_panel_section_label: Annotation
- name: snpeff_to_peptides
  owner: jjohnson
  revisions:
  - 80eff5812b2a
  tool_panel_section_label: Annotation
- name: snpeff_cds_report
  owner: jjohnson
  revisions:
  - fbb6510186df
  tool_panel_section_label: Annotation
- name: interproscan5
  owner: bgruening
  revisions:
  - e32f2ea6a139
  tool_panel_section_label: Annotation
- name: dgidb_annotator
  owner: devteam
  revisions:
  - c5bb987015c5
  tool_panel_section_label: Annotation
- name: tmhmm_and_signalp
  owner: peterjc
  revisions:
  - 7de64c8b258d
  tool_panel_section_label: Annotation
- name: dgidb_annotator
  owner: devteam
  revisions:
  - c5bb987015c5
  tool_panel_section_label: Annotation
- name: peptideshaker
  owner: galaxyp
  revisions:
  - 78fad25eff17
  tool_panel_section_label: Proteomics
- name: hardklor
  owner: galaxyp
  revisions:
  - 539f157784e7
  tool_panel_section_label: Proteomics
- name: morpheus
  owner: galaxyp
  revisions:
  - e0104a9f20f0
  tool_panel_section_label: Proteomics
- name: protease_prediction
  owner: bgruening
  revisions:
  - c7a363d7ab26
  tool_panel_section_label: Proteomics
- name: decoyfasta
  owner: galaxyp
  revisions:
  - c15d72720643
  tool_panel_section_label: Proteomics
- name: autodock_vina_prepare_ligand
  owner: bgruening
  revisions:
  - 965badb456d4
  tool_panel_section_label: ChemicalToolBox
- name: autodock_vina
  owner: bgruening
  revisions:
  - 65ffed035ca8
  tool_panel_section_label: ChemicalToolBox
- name: autodock_vina_prepare_receptor
  owner: bgruening
  revisions:
  - d15e5a2a7558
  tool_panel_section_label: ChemicalToolBox
- name: openmg
  owner: bgruening
  revisions:
  - 8d2b075966d6
  tool_panel_section_label: ChemicalToolBox
- name: ctb_machine_learning
  owner: bgruening
  revisions:
  - fe542273784f
  tool_panel_section_label: ChemicalToolBox
- name: chemical_data_sources
  owner: bgruening
  revisions:
  - c2055dd1927b
  tool_panel_section_label: ChemicalToolBox
- name: silicos_it
  owner: bgruening
  revisions:
  - 5f1d98674a21
  tool_panel_section_label: ChemicalToolBox
- name: confab
  owner: bgruening
  revisions:
  - 039ef13e3676
  tool_panel_section_label: ChemicalToolBox
- name: simsearch
  owner: bgruening
  revisions:
  - 52e5c0f2907f
  tool_panel_section_label: ChemicalToolBox
- name: opsin
  owner: bgruening
  revisions:
  - cda22c799d0a
  tool_panel_section_label: ChemicalToolBox
- name: natural_product_likeness
  owner: bgruening
  revisions:
  - b2cad51889ea
  tool_panel_section_label: ChemicalToolBox
- name: chemfp
  owner: bgruening
  revisions:
  - 43a9e7d9b24f
  tool_panel_section_label: ChemicalToolBox
- name: openbabel
  owner: bgruening
  revisions:
  - 125da3a296ca
  - b52872a1755a
  tool_panel_section_label: ChemicalToolBox
- name: rdkit
  owner: bgruening
  revisions:
  - 6bb56f3a8de0
  tool_panel_section_label: ChemicalToolBox
- name: osra
  owner: bgruening
  revisions:
  - b2edf498e8fb
  tool_panel_section_label: ChemicalToolBox
- name: hifive
  owner: sauria
  revisions:
  - 4a978cf8cf92
  tool_panel_section_label: Test Tools
- name: translate_bed_sequences
  owner: jjohnson
  revisions:
  - d328db400280
  tool_panel_section_label: Operate on Genomic Intervals
- name: filter_bed_on_splice_junctions
  owner: jjohnson
  revisions:
  - 915e5c5e02e6
  tool_panel_section_label: Operate on Genomic Intervals
- name: diffbind
  owner: bgruening
  revisions:
  - 69138bfd8644
  tool_panel_section_label: Peak Calling
- name: picard
  owner: devteam
  revisions:
  - ab1f60c26526
  tool_panel_section_label: Picard
- name: emboss_5
  owner: devteam
  revisions:
  - 1b6538ec8b56
  tool_panel_section_label: EMBOSS
- name: kraken_taxonomy_report
  owner: iuc
  revisions:
  - 27d65c78863c
  - 3f1a0d47ea8d
  - b11b3ac48bb9
  - b97694b21bc3
  tool_panel_section_label: NCBI Blast
- name: ncbi_blast_plus
  owner: devteam
  revisions:
  - 7f3c448e119b
  tool_panel_section_label: NCBI Blast
- name: kraken2tax
  owner: devteam
  revisions:
  - f03c7ba8d8bc
  tool_panel_section_label: NCBI Blast
- name: kraken
  owner: devteam
  revisions:
  - b2392a9dfb01
  tool_panel_section_label: NCBI Blast
- name: blast_rbh
  owner: peterjc
  revisions:
  - 9ba8ebb636f4
  tool_panel_section_label: NCBI Blast
- name: kraken_report
  owner: devteam
  revisions:
  - 9ae975c30dde
  tool_panel_section_label: NCBI Blast
- name: taxonomy_krona_chart
  owner: crs4
  revisions:
  - 020b3087d0b7
  tool_panel_section_label: NCBI Blast
- name: kraken_filter
  owner: devteam
  revisions:
  - fe94f318048c
  tool_panel_section_label: NCBI Blast
- name: kraken_translate
  owner: devteam
  revisions:
  - b9971bca4b01
  tool_panel_section_label: NCBI Blast
- name: sample_seqs
  owner: peterjc
  revisions:
  - 02c13ef1a669
  tool_panel_section_label: NCBI Blast
- name: diamond
  owner: bgruening
  revisions:
  - 54f751e413f4
  - 98037ef3d2a9
  tool_panel_section_label: NCBI Blast
- name: blastxml_to_top_descr
  owner: peterjc
  revisions:
  - fe1ed74793c9
  tool_panel_section_label: NCBI Blast
- name: allele_counts
  owner: nick
  revisions:
  - 411adeff1eec
  tool_panel_section_label: Variant Calling
- name: naive_variant_caller
  owner: blankenberg
  revisions:
  - cfc86c3fc5c8
  tool_panel_section_label: Variant Calling
- name: bamleftalign
  owner: devteam
  revisions:
  - e65540a91b87
  tool_panel_section_label: Variant Calling
- name: vcfcheck
  owner: devteam
  revisions:
  - 40a339e4692e
  tool_panel_section_label: Variant Calling
- name: vcfaddinfo
  owner: devteam
  revisions:
  - 196ed76d2619
  tool_panel_section_label: Variant Calling
- name: vcf2tsv
  owner: devteam
  revisions:
  - 8fb92fcd20ae
  tool_panel_section_label: Variant Calling
- name: vcfleftalign
  owner: devteam
  revisions:
  - 8e02d116b0f9
  tool_panel_section_label: Variant Calling
- name: vcfcombine
  owner: devteam
  revisions:
  - 18f9f2624bd6
  tool_panel_section_label: Variant Calling
- name: vcfprimers
  owner: devteam
  revisions:
  - bc5949d36b34
  tool_panel_section_label: Variant Calling
- name: vcfsort
  owner: devteam
  revisions:
  - a8c5440d69e3
  tool_panel_section_label: Variant Calling
- name: vcfhethom
  owner: devteam
  revisions:
  - c9bb9f126282
  tool_panel_section_label: Variant Calling
- name: vcfrandomsample
  owner: devteam
  revisions:
  - c035d96c5cbe
  tool_panel_section_label: Variant Calling
- name: vcfbedintersect
  owner: devteam
  revisions:
  - 31a86dbe17c0
  tool_panel_section_label: Variant Calling
- name: vcfgenotypes
  owner: devteam
  revisions:
  - 82635a34fbe6
  tool_panel_section_label: Variant Calling
- name: vcffixup
  owner: devteam
  revisions:
  - 9d7e64e4b9fc
  tool_panel_section_label: Variant Calling
- name: vcffilter
  owner: devteam
  revisions:
  - 952059348a30
  tool_panel_section_label: Variant Calling
- name: vcfgeno2haplo
  owner: devteam
  revisions:
  - 5bd9783e982a
  tool_panel_section_label: Variant Calling
- name: vcfallelicprimitives
  owner: devteam
  revisions:
  - 0a69cff7946e
  tool_panel_section_label: Variant Calling
- name: vcfbreakcreatemulti
  owner: devteam
  revisions:
  - 3aa04b92957f
  tool_panel_section_label: Variant Calling
- name: vcfvcfintersect
  owner: devteam
  revisions:
  - 1bc1b2b8b341
  tool_panel_section_label: Variant Calling
- name: vcfannotate
  owner: devteam
  revisions:
  - d64204113938
  tool_panel_section_label: Variant Calling
- name: vcfcommonsamples
  owner: devteam
  revisions:
  - d58a307b9cef
  tool_panel_section_label: Variant Calling
- name: vcfflatten
  owner: devteam
  revisions:
  - 1336a70f5c02
  tool_panel_section_label: Variant Calling
- name: vcfdistance
  owner: devteam
  revisions:
  - 48e458c721b3
  tool_panel_section_label: Variant Calling
- name: vcfannotategenotypes
  owner: devteam
  revisions:
  - c96a7e49150a
  tool_panel_section_label: Variant Calling
- name: vcfselectsamples
  owner: devteam
  revisions:
  - 43cecdfe7107
  tool_panel_section_label: Variant Calling
- name: bcftools_call
  owner: iuc
  revisions:
  - 01fd33bc2e75
  - 072f606e2e69
  - 0fba2c15b40d
  - 21687e35f066
  - 22637b1a55bf
  - 3296c3680d96
  - 4fa18320d29b
  - 5801eff9ac7e
  - 912a8ff07fc9
  - a531317a3527
  - b03984136ce4
  - c37b684e7f4e
  - cb30a39055d0
  - d267bcfdc8fe
  - f0d44631365f
  tool_panel_section_label: Variant Calling
- name: vcftools_merge
  owner: devteam
  revisions:
  - 71e19ddf52f5
  tool_panel_section_label: Variant Calling
- name: vcftools_isec
  owner: devteam
  revisions:
  - aa232e38338f
  tool_panel_section_label: Variant Calling
- name: vt_variant_tools
  owner: iuc
  revisions:
  - 6e073fc99d9c
  tool_panel_section_label: Variant Calling
- name: bcftools
  owner: iuc
  revisions:
  - bdd0cb7fbedf
  - e5e78d1e09a6
  tool_panel_section_label: Variant Calling
- name: vcftools_compare
  owner: devteam
  revisions:
  - ad50c257e758
  tool_panel_section_label: Variant Calling
- name: vcftools_annotate
  owner: devteam
  revisions:
  - 57a6550df582
  tool_panel_section_label: Variant Calling
- name: vcftools_slice
  owner: devteam
  revisions:
  - 1363e5d4a8b8
  tool_panel_section_label: Variant Calling
- name: vcftools_subset
  owner: devteam
  revisions:
  - 23436d1d0fa1
  tool_panel_section_label: Variant Calling
- name: exomedepth
  owner: crs4
  revisions:
  - 45af4a9748cf
  tool_panel_section_label: Variant Calling
- name: deeptools_plot_fingerprint
  owner: bgruening
  revisions:
  - f8fc4e5aff9d
  tool_panel_section_label: deepTools
- name: deeptools_plot_coverage
  owner: bgruening
  revisions:
  - 7e361d147872
  tool_panel_section_label: deepTools
- name: deeptools_plot_correlation
  owner: bgruening
  revisions:
  - f264afa9fa6f
  tool_panel_section_label: deepTools
- name: deeptools_plot_profile
  owner: bgruening
  revisions:
  - aac8444d6681
  tool_panel_section_label: deepTools
- name: deeptools_multi_bigwig_summary
  owner: bgruening
  revisions:
  - db940c262830
  tool_panel_section_label: deepTools
- name: deeptools_compute_gc_bias
  owner: bgruening
  revisions:
  - 29fcfd36e90a
  tool_panel_section_label: deepTools
- name: deeptools_compute_matrix
  owner: bgruening
  revisions:
  - fd1275e01605
  tool_panel_section_label: deepTools
- name: deeptools_plot_pca
  owner: bgruening
  revisions:
  - 38e3f226248b
  tool_panel_section_label: deepTools
- name: deeptools_multi_bam_summary
  owner: bgruening
  revisions:
  - 2d466b530754
  tool_panel_section_label: deepTools
- name: deeptools_correct_gc_bias
  owner: bgruening
  revisions:
  - a02cfa31e9cb
  tool_panel_section_label: deepTools
- name: deeptools_plot_heatmap
  owner: bgruening
  revisions:
  - 512155688d98
  tool_panel_section_label: deepTools
- name: deeptools_bigwig_compare
  owner: bgruening
  revisions:
  - bfff7454b59a
  tool_panel_section_label: deepTools
- name: deeptools_bam_pe_fragmentsize
  owner: bgruening
  revisions:
  - 81b1e3e1fc6c
  tool_panel_section_label: deepTools
- name: deeptools_bam_coverage
  owner: bgruening
  revisions:
  - 5d11599b8a7d
  tool_panel_section_label: deepTools
- name: deeptools_bam_compare
  owner: bgruening
  revisions:
  - a1ca9bccc7f2
  tool_panel_section_label: deepTools
- name: tag_pileup_frequency
  owner: iuc
  revisions:
  - 580e8bcb6413
  - 6432735cdb22
  - b7d7ae3963aa
  - fa82c3c9ced3
  tool_panel_section_label: SAM/BAM
- name: pileup_interval
  owner: devteam
  revisions:
  - ef11139d4545
  tool_panel_section_label: SAM/BAM
- name: bamtools
  owner: devteam
  revisions:
  - 04866f817daa
  tool_panel_section_label: SAM/BAM
- name: bamtools_split
  owner: devteam
  revisions:
  - e2c1b62e1db1
  tool_panel_section_label: SAM/BAM
- name: ngsutils_bam_filter
  owner: iuc
  revisions:
  - 2e957d4c4b95
  - 49bf71fbc574
  - 4e4e4093d65d
  - 7a68005de299
  tool_panel_section_label: SAM/BAM
- name: bamtools_filter
  owner: devteam
  revisions:
  - bd735cae4ce6
  tool_panel_section_label: SAM/BAM
- name: sam_merge
  owner: devteam
  revisions:
  - 1977f1637890
  tool_panel_section_label: SAM/BAM
- name: bamhash
  owner: bgruening
  revisions:
  - 63f6f42d112b
  tool_panel_section_label: SAM/BAM
- name: samtools_bedcov
  owner: devteam
  revisions:
  - 12749212f61b
  tool_panel_section_label: SAM/BAM
- name: samtools_sort
  owner: devteam
  revisions:
  - cab3f8d35989
  tool_panel_section_label: SAM/BAM
- name: samtools_rmdup
  owner: devteam
  revisions:
  - 9129584416e2
  tool_panel_section_label: SAM/BAM
- name: samtools_idxstats
  owner: devteam
  revisions:
  - 88b8c2916784
  tool_panel_section_label: SAM/BAM
- name: samtools_slice_bam
  owner: devteam
  revisions:
  - a4a10c7924d1
  tool_panel_section_label: SAM/BAM
- name: samtools_mpileup
  owner: devteam
  revisions:
  - 583abf29fc8e
  tool_panel_section_label: SAM/BAM
- name: samtools_calmd
  owner: devteam
  revisions:
  - 33208952b99d
  tool_panel_section_label: SAM/BAM
- name: samtools_flagstat
  owner: devteam
  revisions:
  - cc61ade70eb8
  tool_panel_section_label: SAM/BAM
- name: samtools_reheader
  owner: devteam
  revisions:
  - db000c6007a0
  tool_panel_section_label: SAM/BAM
- name: samtools_split
  owner: devteam
  revisions:
  - b7f7826ef1cd
  tool_panel_section_label: SAM/BAM
- name: samtools_stats
  owner: devteam
  revisions:
  - 24c5d43cb545
  tool_panel_section_label: SAM/BAM
- name: sam_pileup
  owner: devteam
  revisions:
  - 890d97772e2a
  tool_panel_section_label: SAM/BAM
- name: samtool_filter2
  owner: devteam
  revisions:
  - b7aa423007bf
  tool_panel_section_label: SAM/BAM
- name: samtools_phase
  owner: devteam
  revisions:
  - 6166013090c0
  tool_panel_section_label: SAM/BAM
- name: sam2interval
  owner: devteam
  revisions:
  - 8c737b8ddc45
  tool_panel_section_label: SAM/BAM
- name: pileup_parser
  owner: devteam
  revisions:
  - 85bedbea8a12
  tool_panel_section_label: SAM/BAM
- name: gemini_db_info
  owner: iuc
  revisions:
  - 496124e09f82
  - 7d75673f4d6f
  - b597e1cd14b1
  - bc8b01d1b496
  - c2a413e47fe9
  - f3cc64057b4e
  tool_panel_section_label: Gemini
- name: gemini_windower
  owner: iuc
  revisions:
  - 0c58ba91d018
  - 3b5b1ebc8423
  - 406d3552beca
  - 9aad9ef0502c
  - 9b462be5a604
  - c15b615cdc3b
  tool_panel_section_label: Gemini
- name: gemini_burden
  owner: iuc
  revisions:
  - 12112e6e5ea4
  - 699ce2631e79
  - 95a149a9a75d
  - c70d79e0eed7
  - df57188562f0
  - f0bf88e9e689
  tool_panel_section_label: Gemini
- name: gemini_gene_wise
  owner: iuc
  revisions:
  - 0db31ae5295e
  - 452104bdc655
  - 4b26f6c99227
  - 4f55668547fc
  - 99d6e7b1b7f1
  - a26f0a30df65
  - e57a1b0ac6be
  tool_panel_section_label: Gemini
- name: gemini_stats
  owner: iuc
  revisions:
  - 5c9efee9cb1e
  - 73b103195e2a
  - 86d4303cc3ca
  - a0ee6874a23b
  - ac761838cdaf
  - b92cfa44f5be
  - cdd90678004a
  tool_panel_section_label: Gemini
- name: gemini_mendel_errors
  owner: iuc
  revisions:
  - 009a8d614a83
  - 00c2734b3bea
  - dd963f00f297
  tool_panel_section_label: Gemini
- name: gemini_amend
  owner: iuc
  revisions:
  - 2281967e7bc3
  - 334e946cacd4
  - a02cd62adb70
  - b8b120a4cef7
  - be828b79bd4d
  - bff8fad3fb69
  tool_panel_section_label: Gemini
- name: gemini_pathways
  owner: iuc
  revisions:
  - 2bce41988d8e
  - 66bc68095012
  - 69b5327a1f88
  - 9199331c3421
  - 9551b3da9f5d
  - c63b7eefb07a
  - d5ec6384a3be
  tool_panel_section_label: Gemini
- name: gemini_dump
  owner: iuc
  revisions:
  - 187b57debbba
  - 96a2d270bf0f
  - c3da7c5f2141
  tool_panel_section_label: Gemini
- name: gemini_region
  owner: iuc
  revisions:
  - 0239bb5482c1
  - 601b70d10d92
  - bb4a5f979906
  tool_panel_section_label: Gemini
- name: gemini_actionable_mutations
  owner: iuc
  revisions:
  - 142d95ab942e
  - 643a9ad97f08
  - 712aa8283200
  - 9f0f5e984ae3
  - db47f4939381
  - f62ed0e84665
  tool_panel_section_label: Gemini
- name: gemini_lof_sieve
  owner: iuc
  revisions:
  - 295814260d95
  - 2969a1f43b7d
  - 4b5123d51e8c
  - 93a391b4602c
  - be7ac09bc2fa
  - dda378a72430
  - e1920f41a1ca
  tool_panel_section_label: Gemini
- name: gemini_query
  owner: iuc
  revisions:
  - 5596c2dc4218
  - 77a1e60fd1de
  - 7ca6716748c2
  - 840fb4850be3
  - ab195e756e5e
  - cd00221d67cb
  - da74170c55c7
  tool_panel_section_label: Gemini
- name: gemini_fusions
  owner: iuc
  revisions:
  - 37f9901b674d
  - 6e3d2bd01a96
  - 8151a5a0e4f6
  - 8295781a3c27
  - 8a68d9a33023
  - b35fd707c586
  - c00dcd1455a0
  tool_panel_section_label: Gemini
- name: gemini_load
  owner: iuc
  revisions:
  - 2270a8b83c12
  - 269c40fdcccb
  - 45296e47d565
  - 5c5cdbdc3534
  - 64132aa2d62a
  - 9f74d7b0704a
  - b2c25142267e
  - b5b53c27baca
  tool_panel_section_label: Gemini
- name: gemini_de_novo
  owner: iuc
  revisions:
  - 8850488002dc
  - 9db3e299b1c8
  tool_panel_section_label: Gemini
- name: gemini_annotate
  owner: iuc
  revisions:
  - 0c8f7322f8fc
  - 3859552a63d8
  - 567837ca5f33
  - 5bcaca8085bd
  - cf0f0f05ba9f
  - f2f3bc622a16
  tool_panel_section_label: Gemini
- name: gemini_recessive_and_dominant
  owner: iuc
  revisions:
  - 05124dc72dba
  - 69ec574f6f41
  - a78bfd5264b1
  tool_panel_section_label: Gemini
- name: gemini_roh
  owner: iuc
  revisions:
  - 345d41f3f574
  - 60f477e3c79b
  - 91b4db3e6df4
  - ce54eb6fd5f9
  - d65ca2fa673b
  - e7ad2a721c4b
  - e8349da26ed5
  tool_panel_section_label: Gemini
- name: gemini_set_somatic
  owner: iuc
  revisions:
  - 230c975e7759
  - 3208dd1dbfe2
  - 5fd4a5f9ee31
  - 7814e39409d1
  - 7b031989ea12
  - '991049484627'
  - e4e2128460e3
  tool_panel_section_label: Gemini
- name: gemini_qc
  owner: iuc
  revisions:
  - 137a3e07062e
  - 20f2ecf46dcb
  - 246ad1a7ff20
  - 5d18dcbf2a0c
  - 8414eecc3828
  - 86e46972e183
  - a875f940d8fd
  tool_panel_section_label: Gemini
- name: gemini_comp_hets
  owner: iuc
  revisions:
  - 6192f3a2f96f
  - 62647e2637f6
  tool_panel_section_label: Gemini
- name: gemini_interactions
  owner: iuc
  revisions:
  - 2550239feed5
  - 2ddee6cd4a5a
  - 527c8e4a356f
  - 7028ca3cac1c
  - a6d326ffbb72
  - ce6db5020339
  - f745f54638e5
  tool_panel_section_label: Gemini
- name: genome_diversity
  owner: miller-lab
  revisions:
  - e56023008e36
  tool_panel_section_label: Genome Diversity
- name: stacks_sstacks
  owner: iuc
  revisions:
  - 563af4497055
  - 95e37a28704b
  - e38d181d4e72
  - e880ddd2d8fa
  tool_panel_section_label: RAD-seq
- name: stacks_genotypes
  owner: iuc
  revisions:
  - 00f4a4e553ae
  - 46f061f3cfeb
  - 5af94af9ec8f
  - dbe3901aace2
  tool_panel_section_label: RAD-seq
- name: stacks_denovomap
  owner: iuc
  revisions:
  - 2b1dd7ab69f7
  - 9f9d39f582f3
  - b8827c571fbd
  - eb1e95f88e96
  tool_panel_section_label: RAD-seq
- name: stacks_ustacks
  owner: iuc
  revisions:
  - a4ec4f620a77
  - b6de94f2edc0
  - c2e3eca527c2
  - e5c97f09fe06
  tool_panel_section_label: RAD-seq
- name: stacks_assembleperead
  owner: iuc
  revisions:
  - 0c741f364d18
  - 6eaf0f9836c8
  - b08cd32d03ad
  - bc108981ca68
  - fea78fd36a05
  tool_panel_section_label: RAD-seq
- name: stacks_procrad
  owner: iuc
  revisions:
  - 57910d476be9
  - 5d12647ff71f
  - 8fe258d72ff3
  - be78e39d56b3
  tool_panel_section_label: RAD-seq
- name: stacks_refmap
  owner: iuc
  revisions:
  - 1ba1185929c1
  - 4ee074ca88fb
  - 7c42e6768c41
  - ba76bd1eef47
  tool_panel_section_label: RAD-seq
- name: stacks_cstacks
  owner: iuc
  revisions:
  - 5bd1418f4227
  - be3df81c0353
  - dab92afa0c98
  tool_panel_section_label: RAD-seq
- name: stacks_rxstacks
  owner: iuc
  revisions:
  - 2360d8cf42f7
  - 3e43e51b3c3b
  - 77f5db795774
  - 9d0ac63dcfcd
  tool_panel_section_label: RAD-seq
- name: stacks_pstacks
  owner: iuc
  revisions:
  - 0f16a6c30085
  - 67cbd80b83f5
  - 7ebc7d229deb
  - ede5223bc7f1
  tool_panel_section_label: RAD-seq
- name: stacks_populations
  owner: iuc
  revisions:
  - 45db1ba16163
  - 47e83073b7a1
  - 95286af4139b
  - d504d945a655
  tool_panel_section_label: RAD-seq
- name: gecco
  owner: althonos
  revisions:
  - 359232b58f6a
  - cc91d730cc4f
  tool_panel_section_label: Annotation
- name: velvet
  owner: devteam
  revisions:
  - 920677cd220f
  tool_panel_section_label: Assembly
- name: cap3
  owner: artbio
  revisions:
  - d76a0d8a9eac
  tool_panel_section_label: Assembly
- name: concatenate_multiple_datasets
  owner: artbio
  revisions:
  - 55cf9d9defd1
  tool_panel_section_label: Text Manipulation
- name: gsc_scran_normalize
  owner: artbio
  revisions:
  - 252eded61848
  tool_panel_section_label: Single-cell
- name: pathifier
  owner: artbio
  revisions:
  - fec313f5c889
  tool_panel_section_label: Graph/Display Data