Bug Report: Could not initialize class ClassCopierOrdinaryImpl

[DubskySteam]

Brief Summary

While deploying some applications the named error gets thrown. I can't seem to find why this is happening. On my main PC it works without any problems, on my other machines it doesn'tm even though it did without any problems in the past.

Expected Outcome

Expected outcome is the application be succesfully deployed

Current Outcome

The error gets thrown when I tryto deploy the .war file of the microservice.

I tried to re-produce this with different operating systems and machines.

Payara: 6.2023.9

PC 1 (Win11): Deploys correctly
PC 2 (Win11, fresh install): Throws the error
PC 3 (Arch Linux): Throws the error
PC 4 (Debian): Throws the error

All machines have a fully setup java development environment and use the exact same payara server.
(Server files are located on a home-server).

Stacktrace

[2024-01-10T15:59:50.780+0100] [Payara 6.2023.9] [SEVERE] [NCLS-CORE-00026] [javax.enterprise.system.core] [tid: _ThreadID=179 _ThreadName=admin-thread-pool::admin-listener(4)] [timeMillis: 1704898790780] [levelValue: 1000] [[
Exception during lifecycle processing
java.lang.NoClassDefFoundError: Could not initialize class org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$PackageContext.(Wrapper.java:477)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment._clear(Wrapper.java:693)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment.(Wrapper.java:688)
at java.base/java.lang.ThreadLocal$SuppliedThreadLocal.initialValue(ThreadLocal.java:305)
at java.base/java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
at java.base/java.lang.ThreadLocal.get(ThreadLocal.java:172)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper.env(Wrapper.java:886)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper._clear(Wrapper.java:1142)
at org.glassfish.ejb.startup.EjbApplication.loadContainers(EjbApplication.java:242)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:286)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:104)
at org.glassfish.internal.data.ModuleInfo.load(ModuleInfo.java:218)
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:334)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepare(ApplicationLifecycle.java:580)
at org.glassfish.deployment.admin.DeployCommand.execute(DeployCommand.java:570)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:556)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2$1.run(CommandRunnerImpl.java:552)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:399)
at java.base/javax.security.auth.Subject.doAs(Subject.java:376)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$2.execute(CommandRunnerImpl.java:551)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:582)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$3.run(CommandRunnerImpl.java:574)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:399)
at java.base/javax.security.auth.Subject.doAs(Subject.java:376)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:573)
at com.sun.enterprise.v3.admin.CommandRunnerImpl.doCommand(CommandRunnerImpl.java:1497)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1879)
at com.sun.enterprise.v3.admin.CommandRunnerImpl$ExecutionContext.execute(CommandRunnerImpl.java:1755)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:272)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:240)
at org.glassfish.admin.rest.utils.ResourceUtil.runCommand(ResourceUtil.java:294)
at org.glassfish.admin.rest.resources.TemplateListOfResource.createResource(TemplateListOfResource.java:136)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.base/java.lang.reflect.Method.invoke(Method.java:568)
at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory.lambda$static$0(ResourceMethodInvocationHandlerFactory.java:52)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher$1.run(AbstractJavaResourceMethodDispatcher.java:134)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:177)
at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:176)
at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:81)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:478)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:400)
at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:81)
at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:261)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:248)
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:244)
at org.glassfish.jersey.internal.Errors.process(Errors.java:292)
at org.glassfish.jersey.internal.Errors.process(Errors.java:274)
at org.glassfish.jersey.internal.Errors.process(Errors.java:244)
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:265)
at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:240)
at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:697)
at org.glassfish.jersey.grizzly2.httpserver.GrizzlyHttpContainer.service(GrizzlyHttpContainer.java:367)
at org.glassfish.admin.rest.adapter.RestAdapter$2.service(RestAdapter.java:335)
at org.glassfish.admin.rest.adapter.RestAdapter.service(RestAdapter.java:189)
at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:174)
at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:153)
at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:196)
at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:88)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:246)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:178)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:118)
at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:96)
at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:51)
at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:510)
at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:82)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:83)
at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:101)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:535)
at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:515)
at java.base/java.lang.Thread.run(Thread.java:840)
Caused by: java.lang.ExceptionInInitializerError: Exception java.lang.reflect.InaccessibleObjectException: Unable to make private static java.lang.ClassLoader java.io.ObjectInputStream.latestUserDefinedLoader() accessible: module java.base does not "opens java.io" to unnamed module @4a5b48ff [in thread "RunLevelControllerThread-1704898313642"]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:354)
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:297)
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:199)
at java.base/java.lang.reflect.Method.setAccessible(Method.java:193)
at org.glassfish.pfl.basic.reflection.Bridge$1.run(Bridge.java:90)
at org.glassfish.pfl.basic.reflection.Bridge$1.run(Bridge.java:82)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
at org.glassfish.pfl.basic.reflection.Bridge.getLatestUserDefinedLoaderMethod(Bridge.java:81)
at org.glassfish.pfl.basic.reflection.Bridge.(Bridge.java:129)
at org.glassfish.pfl.basic.reflection.Bridge.get(Bridge.java:154)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl$1.run(ClassCopierOrdinaryImpl.java:58)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl$1.run(ClassCopierOrdinaryImpl.java:55)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl.(ClassCopierOrdinaryImpl.java:54)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$PackageContext.(Wrapper.java:477)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment._clear(Wrapper.java:693)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment.(Wrapper.java:688)
at java.base/java.lang.ThreadLocal$SuppliedThreadLocal.initialValue(ThreadLocal.java:305)
at java.base/java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
at java.base/java.lang.ThreadLocal.get(ThreadLocal.java:172)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper.env(Wrapper.java:886)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper._clear(Wrapper.java:1142)
at org.glassfish.ejb.startup.EjbApplication.loadContainers(EjbApplication.java:242)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:286)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:104)
at org.glassfish.internal.data.ModuleInfo.load(ModuleInfo.java:218)
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:334)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepare(ApplicationLifecycle.java:580)
at com.sun.enterprise.v3.server.ApplicationLoaderService.processApplication(ApplicationLoaderService.java:427)
at com.sun.enterprise.v3.server.ApplicationLoaderService.postConstruct(ApplicationLoaderService.java:259)
at org.jvnet.hk2.internal.ClazzCreator.postConstructMe(ClazzCreator.java:303)
at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:351)
at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:466)
at org.glassfish.hk2.runlevel.internal.AsyncRunLevelContext.findOrCreate(AsyncRunLevelContext.java:281)
at org.glassfish.hk2.runlevel.RunLevelContext.findOrCreate(RunLevelContext.java:65)
at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2103)
at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$QueueRunner.oneJob(CurrentTaskFuture.java:1213)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$QueueRunner.run(CurrentTaskFuture.java:1144)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$UpOneLevel.run(CurrentTaskFuture.java:762)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
... 1 more
]]

[2024-01-10T15:59:50.781+0100] [Payara 6.2023.9] [SEVERE] [] [javax.enterprise.system.core] [tid: _ThreadID=179 _ThreadName=admin-thread-pool::admin-listener(4)] [timeMillis: 1704898790781] [levelValue: 1000] [[
Exception while loading the app]]

[2024-01-10T15:59:50.788+0100] [Payara 6.2023.9] [SEVERE] [] [javax.enterprise.system.core] [tid: _ThreadID=179 _ThreadName=admin-thread-pool::admin-listener(4)] [timeMillis: 1704898790788] [levelValue: 1000] [[
Exception while loading the app : Could not initialize class org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl
java.lang.ExceptionInInitializerError: Exception java.lang.reflect.InaccessibleObjectException: Unable to make private static java.lang.ClassLoader java.io.ObjectInputStream.latestUserDefinedLoader() accessible: module java.base does not "opens java.io" to unnamed module @4a5b48ff [in thread "RunLevelControllerThread-1704898313642"]
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:354)
at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:297)
at java.base/java.lang.reflect.Method.checkCanSetAccessible(Method.java:199)
at java.base/java.lang.reflect.Method.setAccessible(Method.java:193)
at org.glassfish.pfl.basic.reflection.Bridge$1.run(Bridge.java:90)
at org.glassfish.pfl.basic.reflection.Bridge$1.run(Bridge.java:82)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
at org.glassfish.pfl.basic.reflection.Bridge.getLatestUserDefinedLoaderMethod(Bridge.java:81)
at org.glassfish.pfl.basic.reflection.Bridge.(Bridge.java:129)
at org.glassfish.pfl.basic.reflection.Bridge.get(Bridge.java:154)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl$1.run(ClassCopierOrdinaryImpl.java:58)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl$1.run(ClassCopierOrdinaryImpl.java:55)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:318)
at org.glassfish.pfl.dynamic.copyobject.impl.ClassCopierOrdinaryImpl.(ClassCopierOrdinaryImpl.java:54)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$PackageContext.(Wrapper.java:477)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment._clear(Wrapper.java:693)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper$Environment.(Wrapper.java:688)
at java.base/java.lang.ThreadLocal$SuppliedThreadLocal.initialValue(ThreadLocal.java:305)
at java.base/java.lang.ThreadLocal.setInitialValue(ThreadLocal.java:195)
at java.base/java.lang.ThreadLocal.get(ThreadLocal.java:172)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper.env(Wrapper.java:886)
at org.glassfish.pfl.dynamic.codegen.spi.Wrapper._clear(Wrapper.java:1142)
at org.glassfish.ejb.startup.EjbApplication.loadContainers(EjbApplication.java:242)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:286)
at org.glassfish.ejb.startup.EjbDeployer.load(EjbDeployer.java:104)
at org.glassfish.internal.data.ModuleInfo.load(ModuleInfo.java:218)
at org.glassfish.internal.data.ApplicationInfo.load(ApplicationInfo.java:334)
at com.sun.enterprise.v3.server.ApplicationLifecycle.prepare(ApplicationLifecycle.java:580)
at com.sun.enterprise.v3.server.ApplicationLoaderService.processApplication(ApplicationLoaderService.java:427)
at com.sun.enterprise.v3.server.ApplicationLoaderService.postConstruct(ApplicationLoaderService.java:259)
at org.jvnet.hk2.internal.ClazzCreator.postConstructMe(ClazzCreator.java:303)
at org.jvnet.hk2.internal.ClazzCreator.create(ClazzCreator.java:351)
at org.jvnet.hk2.internal.SystemDescriptor.create(SystemDescriptor.java:466)
at org.glassfish.hk2.runlevel.internal.AsyncRunLevelContext.findOrCreate(AsyncRunLevelContext.java:281)
at org.glassfish.hk2.runlevel.RunLevelContext.findOrCreate(RunLevelContext.java:65)
at org.jvnet.hk2.internal.Utilities.createService(Utilities.java:2103)
at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:93)
at org.jvnet.hk2.internal.ServiceHandleImpl.getService(ServiceHandleImpl.java:67)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$QueueRunner.oneJob(CurrentTaskFuture.java:1213)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$QueueRunner.run(CurrentTaskFuture.java:1144)
at org.glassfish.hk2.runlevel.internal.CurrentTaskFuture$UpOneLevel.run(CurrentTaskFuture.java:762)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635)
at java.base/java.lang.Thread.run(Thread.java:840)
]]

Reproducer

https://github.com/DubskySteam/AQP/releases/download/stable_24.1/admin-1.4.war

or download (admin-1.4.war) directly from release:
https://github.com/DubskySteam/AQP/releases/tag/stable_24.1

Operating System

Windows 11, Arch Linux, Debian

JDK Version

OpenJDK 17

Payara Distribution

Payara Server Web Profile

[Elifzeynepedman]

Hi @DubskySteam,

Could you please conduct a test using the most recent version of Payara, specifically version 6.2023.12?

Best Regards,
Elif

[DubskySteam]

I pulled the newest version of payara (6.2023.12) and it deployed correctly.
Out of interest I also tried a fresh "installation" of 6.2023.9 and it also worked there.

Probably a configuration error in the server I currently have running?
But it still looks weird to me that I can deploy from one pc, and others throw the error.

[Elifzeynepedman]

Hi @DubskySteam,

Many thanks for verifying it is deployed correctly on 6.2023.12.

As the problem was resolved with a fresh installation of Payara version 6.2023.9, this could suggest that the issue might be related to a specific configuration.

Thank you,
Elif