From ff1ddeadf4631ee50574dd62d2110559c9011007 Mon Sep 17 00:00:00 2001 From: kavlahkaff Date: Tue, 17 Dec 2024 12:19:58 +0100 Subject: [PATCH] bumped up patch-version, added changelog --- 2016_Mallick_SGDP1240K_diploid_pulldown/CHANGELOG.md | 1 + 2016_Mallick_SGDP1240K_diploid_pulldown/POSEIDON.yml | 4 ++-- 2016_MartinianoNatureCommunications/CHANGELOG.md | 1 + 2016_MartinianoNatureCommunications/POSEIDON.yml | 4 ++-- 2016_SchiffelsNatureCommunications/CHANGELOG.md | 1 + 2016_SchiffelsNatureCommunications/POSEIDON.yml | 4 ++-- 2018_OlaldeNature/CHANGELOG.md | 1 + 2018_OlaldeNature/POSEIDON.yml | 4 ++-- 2019_Brace_Britain/CHANGELOG.md | 1 + 2019_Brace_Britain/POSEIDON.yml | 4 ++-- 2020_Margaryan_Viking/CHANGELOG.md | 1 + 2020_Margaryan_Viking/POSEIDON.yml | 4 ++-- 2021_GnecchiRuscone_KazakhSteppe/CHANGELOG.md | 1 + 2021_GnecchiRuscone_KazakhSteppe/POSEIDON.yml | 4 ++-- 2021_PattersonNature/CHANGELOG.md | 1 + 2021_PattersonNature/POSEIDON.yml | 4 ++-- 2022_Gretzinger_AngloSaxons/CHANGELOG.md | 1 + 2022_Gretzinger_AngloSaxons/POSEIDON.yml | 4 ++-- 2024_Allentoft_PostGlacial_WestEurasia/CHANGELOG.md | 1 + 2024_Allentoft_PostGlacial_WestEurasia/POSEIDON.yml | 5 +++-- .../CHANGELOG.md | 1 + .../POSEIDON.yml | 4 ++-- 22 files changed, 34 insertions(+), 22 deletions(-) create mode 100644 2024_Allentoft_PostGlacial_WestEurasia/CHANGELOG.md diff --git a/2016_Mallick_SGDP1240K_diploid_pulldown/CHANGELOG.md b/2016_Mallick_SGDP1240K_diploid_pulldown/CHANGELOG.md index 564bbd19..31609185 100644 --- a/2016_Mallick_SGDP1240K_diploid_pulldown/CHANGELOG.md +++ b/2016_Mallick_SGDP1240K_diploid_pulldown/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.3: fixed entries where multiple country options were provided - V 2.1.2: added the main publication MallikNature2016 to the Publication variable in the .janno file for some samples - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file diff --git a/2016_Mallick_SGDP1240K_diploid_pulldown/POSEIDON.yml b/2016_Mallick_SGDP1240K_diploid_pulldown/POSEIDON.yml index dc46a337..9fa92812 100644 --- a/2016_Mallick_SGDP1240K_diploid_pulldown/POSEIDON.yml +++ b/2016_Mallick_SGDP1240K_diploid_pulldown/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: ghalichi@shh.mpg.de - name: Clemens Schmid email: clemens_schmid@eva.mpg.de -packageVersion: 2.1.2 -lastModified: 2023-11-07 +packageVersion: 2.1.3 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: SGDP.bed diff --git a/2016_MartinianoNatureCommunications/CHANGELOG.md b/2016_MartinianoNatureCommunications/CHANGELOG.md index f2371d81..c707212e 100644 --- a/2016_MartinianoNatureCommunications/CHANGELOG.md +++ b/2016_MartinianoNatureCommunications/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: changed country naming to ISO-standard name - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs diff --git a/2016_MartinianoNatureCommunications/POSEIDON.yml b/2016_MartinianoNatureCommunications/POSEIDON.yml index c18efd6f..6b8e8ecb 100644 --- a/2016_MartinianoNatureCommunications/POSEIDON.yml +++ b/2016_MartinianoNatureCommunications/POSEIDON.yml @@ -5,8 +5,8 @@ description: Iron Age, Roman Era and Early Medieval samples from Great Britain. contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2016_MartinianoNatureCommunications.bed diff --git a/2016_SchiffelsNatureCommunications/CHANGELOG.md b/2016_SchiffelsNatureCommunications/CHANGELOG.md index f2371d81..c707212e 100644 --- a/2016_SchiffelsNatureCommunications/CHANGELOG.md +++ b/2016_SchiffelsNatureCommunications/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: changed country naming to ISO-standard name - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.1: Genetic_Source_Accession_IDs diff --git a/2016_SchiffelsNatureCommunications/POSEIDON.yml b/2016_SchiffelsNatureCommunications/POSEIDON.yml index 47de0845..7c54d3e0 100644 --- a/2016_SchiffelsNatureCommunications/POSEIDON.yml +++ b/2016_SchiffelsNatureCommunications/POSEIDON.yml @@ -5,8 +5,8 @@ description: Iron Age and Early Medieval samples from Great Britain. Originally contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2016_SchiffelsNatureCommunications.bed diff --git a/2018_OlaldeNature/CHANGELOG.md b/2018_OlaldeNature/CHANGELOG.md index deb43c93..deca63b8 100644 --- a/2018_OlaldeNature/CHANGELOG.md +++ b/2018_OlaldeNature/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.1.2: changed country naming to ISO-standard name - V 2.1.1: Fixed attribution to a wrong AADR version - V 2.1.0: Update of references in the .bib file - V 2.0.2: Some missing coordinates updated diff --git a/2018_OlaldeNature/POSEIDON.yml b/2018_OlaldeNature/POSEIDON.yml index 3311124a..d3b1266a 100644 --- a/2018_OlaldeNature/POSEIDON.yml +++ b/2018_OlaldeNature/POSEIDON.yml @@ -5,8 +5,8 @@ description: Ancient genomes from the Bell Beaker period in Europe. Originally A contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.1.1 -lastModified: 2023-07-11 +packageVersion: 2.1.2 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2018_OlaldeNature.bed diff --git a/2019_Brace_Britain/CHANGELOG.md b/2019_Brace_Britain/CHANGELOG.md index 15f48d53..46baf272 100644 --- a/2019_Brace_Britain/CHANGELOG.md +++ b/2019_Brace_Britain/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 3.1.1: changed country naming to ISO-standard name - V 3.1.0: Linked ENA data with poseidon_IDs - V 3.0.0: Merged 2019_Brace_Britain with 2019_BraceNatureEcologyEvolution - they are from the same publication - V 2.1.0: Update of references in the .bib file diff --git a/2019_Brace_Britain/POSEIDON.yml b/2019_Brace_Britain/POSEIDON.yml index 83ce9b0f..f9e6b9d9 100644 --- a/2019_Brace_Britain/POSEIDON.yml +++ b/2019_Brace_Britain/POSEIDON.yml @@ -4,8 +4,8 @@ description: Originally AADR v42.4. contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 3.1.0 -lastModified: 2024-01-25 +packageVersion: 3.1.1 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2019_Brace.bed diff --git a/2020_Margaryan_Viking/CHANGELOG.md b/2020_Margaryan_Viking/CHANGELOG.md index acc4864d..2bac56c9 100644 --- a/2020_Margaryan_Viking/CHANGELOG.md +++ b/2020_Margaryan_Viking/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.2.1: changed country naming to ISO-standard name - V 2.2.0: Update of references in the .bib file - V 2.1.0: added a .ssf file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2020_Margaryan_Viking/POSEIDON.yml b/2020_Margaryan_Viking/POSEIDON.yml index 0f09ae37..cbc0cbc1 100644 --- a/2020_Margaryan_Viking/POSEIDON.yml +++ b/2020_Margaryan_Viking/POSEIDON.yml @@ -4,8 +4,8 @@ description: Viking age samples from Europe and Greenland. Originally AADR v44.3 contributor: - name: Ayshin Ghalichi email: ghalichi@shh.mpg.de -packageVersion: 2.2.0 -lastModified: 2023-07-04 +packageVersion: 2.2.1 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: Margaryan_Viking.bed diff --git a/2021_GnecchiRuscone_KazakhSteppe/CHANGELOG.md b/2021_GnecchiRuscone_KazakhSteppe/CHANGELOG.md index c232fc66..43954fd5 100644 --- a/2021_GnecchiRuscone_KazakhSteppe/CHANGELOG.md +++ b/2021_GnecchiRuscone_KazakhSteppe/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 2.2.1: changed country naming to ISO-standard name - V 2.2.0: Update of references in the .bib file - V 2.1.0: added a .ssf file - V 2.0.1: Genetic_Source_Accession_IDs added diff --git a/2021_GnecchiRuscone_KazakhSteppe/POSEIDON.yml b/2021_GnecchiRuscone_KazakhSteppe/POSEIDON.yml index f1610aff..3db335ab 100644 --- a/2021_GnecchiRuscone_KazakhSteppe/POSEIDON.yml +++ b/2021_GnecchiRuscone_KazakhSteppe/POSEIDON.yml @@ -7,8 +7,8 @@ contributor: email: gnecchiruscone@shh.mpg.de - name: Clemens Schmid email: schmid@shh.mpg.de -packageVersion: 2.2.0 -lastModified: 2023-07-04 +packageVersion: 2.2.1 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2021_GnecchiRuscone_KazakhSteppe.bed diff --git a/2021_PattersonNature/CHANGELOG.md b/2021_PattersonNature/CHANGELOG.md index cb8aca08..29b0eb41 100644 --- a/2021_PattersonNature/CHANGELOG.md +++ b/2021_PattersonNature/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 0.4.2: changed country naming to ISO-standard name - V 0.4.1: added the main publication PattersonNature2021 to the Publication variable in the .janno file for some samples - V 0.4.0: Update of references in the .bib file - V 0.3.0: added a .ssf file diff --git a/2021_PattersonNature/POSEIDON.yml b/2021_PattersonNature/POSEIDON.yml index 73994c96..49b92ed8 100644 --- a/2021_PattersonNature/POSEIDON.yml +++ b/2021_PattersonNature/POSEIDON.yml @@ -6,8 +6,8 @@ contributor: email: stephen_clayton@eva.mpg.de - name: Clemens Schmid email: clemens_schmid@eva.mpg.de -packageVersion: 0.4.1 -lastModified: 2023-11-07 +packageVersion: 0.4.2 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2021_PattersonNature.bed diff --git a/2022_Gretzinger_AngloSaxons/CHANGELOG.md b/2022_Gretzinger_AngloSaxons/CHANGELOG.md index 1a7fbdb1..299b1801 100644 --- a/2022_Gretzinger_AngloSaxons/CHANGELOG.md +++ b/2022_Gretzinger_AngloSaxons/CHANGELOG.md @@ -1,3 +1,4 @@ +- V 1.2.1: changed country naming to ISO-standard name - V 1.2.0: Fixed wrongly distributed entries in the Date_Note, Note and Genetic_Source_Accession_IDs columns of the .janno file. - V 1.1.0: Added all 1st-3rd degree relationships found in the publication, affecting dozens of individuals and partial pedigrees. - V 1.0.0: Initial submission \ No newline at end of file diff --git a/2022_Gretzinger_AngloSaxons/POSEIDON.yml b/2022_Gretzinger_AngloSaxons/POSEIDON.yml index 4bdd3de6..07036b00 100644 --- a/2022_Gretzinger_AngloSaxons/POSEIDON.yml +++ b/2022_Gretzinger_AngloSaxons/POSEIDON.yml @@ -9,8 +9,8 @@ contributor: email: stephan_schiffels@eva.mpg.de - name: Clemens Schmid email: clemens_schmid@eva.mpg.de -packageVersion: 1.2.0 -lastModified: 2024-07-15 +packageVersion: 1.2.1 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2022_Gretzinger_AngloSaxons.bed diff --git a/2024_Allentoft_PostGlacial_WestEurasia/CHANGELOG.md b/2024_Allentoft_PostGlacial_WestEurasia/CHANGELOG.md new file mode 100644 index 00000000..3222d085 --- /dev/null +++ b/2024_Allentoft_PostGlacial_WestEurasia/CHANGELOG.md @@ -0,0 +1 @@ +- V 1.0.1: changed country naming to ISO-standard name diff --git a/2024_Allentoft_PostGlacial_WestEurasia/POSEIDON.yml b/2024_Allentoft_PostGlacial_WestEurasia/POSEIDON.yml index 2de87af3..6654c073 100644 --- a/2024_Allentoft_PostGlacial_WestEurasia/POSEIDON.yml +++ b/2024_Allentoft_PostGlacial_WestEurasia/POSEIDON.yml @@ -5,8 +5,8 @@ description: 1240k pull-doen of imputed and pseudohaploid genotypes from Populat contributor: - name: Sanni Peltola email: sanni_peltola@eva.mpg.de -packageVersion: 1.0.0 -lastModified: 2024-08-15 +packageVersion: 1.0.1 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2024_Allentoft_PostGlacial_WestEurasia.bed @@ -20,3 +20,4 @@ jannoFile: 2024_Allentoft_PostGlacial_WestEurasia.janno jannoFileChkSum: 2d56e27bc7a17e851e3fa39a951addee bibFile: 2024_Allentoft_PostGlacial_WestEurasia.bib bibFileChkSum: 0069bd3eb738787ace1d8eec0ea5c706 +changelogFile: CHANGELOG.md diff --git a/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/CHANGELOG.md b/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/CHANGELOG.md index 38eb71ca..382dbf33 100644 --- a/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/CHANGELOG.md +++ b/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/CHANGELOG.md @@ -1,2 +1,3 @@ +- V 1.0.3: changed country-ISO to uppercase - V 1.0.2: Added missing information to the .bib file - V 1.0.1: added info to .janno file after publication diff --git a/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/POSEIDON.yml b/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/POSEIDON.yml index 6ac4a7e7..415d4164 100644 --- a/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/POSEIDON.yml +++ b/2024_GnecchiRuscone_CarpathianBasinAvarPedigrees/POSEIDON.yml @@ -6,8 +6,8 @@ contributor: - name: Luca Traverso email: luca_traverso@eva.mpg.de orcid: 0000-0001-5749-5751 -packageVersion: 1.0.2 -lastModified: 2024-12-03 +packageVersion: 1.0.3 +lastModified: 2024-12-17 genotypeData: format: PLINK genoFile: 2024_GnecchiRuscone_CarpathianBasinAvarPedigrees.bed