-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathRJwrapper.bbl
129 lines (110 loc) · 4.95 KB
/
RJwrapper.bbl
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
\begin{thebibliography}{18}
\providecommand{\natexlab}[1]{#1}
\providecommand{\url}[1]{\texttt{#1}}
\expandafter\ifx\csname urlstyle\endcsname\relax
\providecommand{\doi}[1]{doi: #1}\else
\providecommand{\doi}{doi: \begingroup \urlstyle{rm}\Url}\fi
\bibitem[Bercot(2017)]{s6}
L.~Bercot.
\newblock \emph{s6: skarnet.org's small and secure supervision software suite},
2017.
\newblock URL \url{https://skarnet.org/software/s6/}.
\bibitem[Boettiger(2015)]{Boettiger2015}
C.~Boettiger.
\newblock {An introduction to Docker for reproducible research, with examples
from the R environment}.
\newblock \emph{ACM SIGOPS Operating Systems Review}, 49\penalty0 (1):\penalty0
71--79, 2015.
\newblock \doi{10.1145/2723872.2723882}.
\newblock URL \url{https://dl.acm.org/citation.cfm?id=2723882
http://arxiv.org/abs/1410.0846}.
\bibitem[Boettiger and Eddelbuettel(2014)]{edd2014}
C.~Boettiger and D.~Eddelbuettel.
\newblock {Introducing Rocker}: {Docker for R}, 2014.
\newblock URL
\url{https://ropensci.org/blog/blog/2014/10/23/introducing-rocker}.
\bibitem[Cetinkaya-Rundel and Rundel(2017)]{Mine}
M.~Cetinkaya-Rundel and C.~W. Rundel.
\newblock Infrastructure and tools for teaching computing throughout the
statistical curriculum.
\newblock \emph{PeerJ Preprints}, 5:\penalty0 e3181v1, Aug. 2017.
\newblock ISSN 2167-9843.
\newblock \doi{10.7287/peerj.preprints.3181v1}.
\newblock URL \url{https://doi.org/10.7287/peerj.preprints.3181v1}.
\bibitem[Clark et~al.(2014)Clark, Culich, Hamlin, and Lovett]{Clark2014}
D.~Clark, A.~Culich, B.~Hamlin, and R.~Lovett.
\newblock {BCE: Berkeley's Common Scientific Compute Environment for Research
and Education}.
\newblock \emph{Proceedings of the 13th Python in Science Conference (SciPy
2014)}, pages 1--8, 2014.
\bibitem[Csárdi(2017)]{rhub}
G.~Csárdi.
\newblock \emph{rhub: Connect to 'R-hub', from 'R'}, 2017.
\newblock URL \url{https://CRAN.R-project.org/package=rhub}.
\newblock R package version 1.0.1.
\bibitem[{Debian Project}(2017)]{apt_pinning}
{Debian Project}.
\newblock Apt-preferences overview, 2017.
\newblock URL \url{https://wiki.debian.org/AptPreferences}.
\bibitem[Docker(2015)]{what-docker}
Docker.
\newblock What is {Docker}?, 2015.
\newblock URL \url{https://www.docker.com/what-docker}.
\bibitem[Eddelbuettel(2014)]{edd_sanitizers}
D.~Eddelbuettel.
\newblock sanitizers, 2014.
\newblock URL \url{http://dirk.eddelbuettel.com/code/sanitizers.html}.
\bibitem[{Lawrence Berkeley National Laboratories}(2017)]{singularity}
{Lawrence Berkeley National Laboratories}.
\newblock Singularity, 2017.
\newblock URL \url{http://singularity.lbl.gov/}.
\bibitem[Ludaescher et~al.(2017)Ludaescher, Chard, Turk, Stodden, and
Gaffney]{wholetale}
B.~Ludaescher, K.~Chard, M.~Turk, V.~Stodden, and N.~Gaffney.
\newblock {The Whole Tale}: Merging science and cyberinfrastructure pathways,
2017.
\newblock URL \url{https://wholetale.org/}.
\bibitem[Plummer(2017)]{jags}
M.~Plummer.
\newblock {JAGS}: {A} program for analysis of {Bayesian} graphical models using
{Gibbs} sampling, 2017.
\newblock URL \url{http://mcmc-jags.sourceforge.net/}.
\newblock Version 4.3.0.
\bibitem[{Revolution Analytics}(2017)]{MRAN}
{Revolution Analytics}.
\newblock {Microsoft R Application Network}, 2017.
\newblock URL \url{https://mran.microsoft.com}.
\bibitem[Stewart et~al.(2015)Stewart, Turner, Vaughn, Gaffney, Cockerill,
Foster, Hancock, Merchant, Skidmore, Stanzione, Taylor, and
Tuecke]{jetstream}
C.~A. Stewart, G.~Turner, M.~Vaughn, N.~I. Gaffney, T.~M. Cockerill, I.~Foster,
D.~Hancock, N.~Merchant, E.~Skidmore, D.~Stanzione, J.~Taylor, and S.~Tuecke.
\newblock {Jetstream: A self-provisioned, scalable science and engineering
cloud environment}.
\newblock In \emph{Proceedings of the 2015 XSEDE Conference on Scientific
Advancements Enabled by Enhanced Cyberinfrastructure - XSEDE '15}, pages
1--8, New York, New York, USA, 2015. ACM Press.
\newblock ISBN 9781450337205.
\newblock \doi{10.1145/2792745.2792774}.
\newblock URL \url{http://dl.acm.org/citation.cfm?doid=2792745.2792774}.
\bibitem[{The Linux Foundation: Projects}(2017)]{oci}
{The Linux Foundation: Projects}.
\newblock {The Open Container Initiative}, 2017.
\newblock URL \url{https://www.opencontainers.org/}.
\bibitem[{UC Berkeley}(2017)]{data8}
{UC Berkeley}.
\newblock {Curriculum Overview} | {Division of Data Sciences}, 2017.
\newblock URL \url{http://data.berkeley.edu/education/curriculum-overview}.
\bibitem[Ushey et~al.(2016)Ushey, McPherson, Cheng, Atkins, and
Allaire]{packrat}
K.~Ushey, J.~McPherson, J.~Cheng, A.~Atkins, and J.~Allaire.
\newblock \emph{packrat: A Dependency Management System for Projects and their
R Package Dependencies}, 2016.
\newblock URL \url{https://CRAN.R-project.org/package=packrat}.
\newblock R package version 0.4.8-1.
\bibitem[Wickham(2017)]{tidyverse}
H.~Wickham.
\newblock \emph{tidyverse: Easily Install and Load 'Tidyverse' Packages}, 2017.
\newblock URL \url{https://CRAN.R-project.org/package=tidyverse}.
\newblock R package version 1.1.1.
\end{thebibliography}