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MEME_ChIP_Oct4_matrices.tf
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AC MEME_ChIP_1
XX
ID MEME_ChIP_1
XX
DE ATGYwAA
P0 A C G T
1 1856 0 0 0
2 0 0 0 1856
3 0 0 1856 0
4 0 1352 0 504
5 1197 0 0 659
6 1856 0 0 0
7 1856 0 0 0
XX
CC program: meme
CC matrix.nb: 1
CC id: convert-matrix_2015-09-24.093426_nMSBIP_input_m1
CC ac:
CC name: convert-matrix_2015-09-24.093426_nMSBIP_input_m1
CC sites: 1856
CC meme.E-value: 4.3e-209
CC matrix.nb: 1
CC consensus.strict: ATGCaAA
CC consensus.strict.rc: TTTGCAT
CC consensus.IUPAC: ATGYwAA
CC consensus.IUPAC.rc: TTWRCAT
CC consensus.regexp: ATG[CT][at]AA
CC consensus.regexp.rc: TT[AT][AG]CAT
XX
//
AC MEME_ChIP_2
XX
ID MEME_ChIP_2
XX
DE CCMCdCCC
P0 A C G T
1 0 1298 0 0
2 0 1298 0 0
3 387 911 0 0
4 0 1298 0 0
5 452 0 408 438
6 0 1298 0 0
7 0 1298 0 0
8 0 1298 0 0
XX
CC program: meme
CC matrix.nb: 3
CC id: 2
CC ac: 2
CC name: 2
CC sites: 1298
CC meme.E-value: 3.1e-085
CC matrix.nb: 3
CC consensus.strict: CCCCaCCC
CC consensus.strict.rc: GGGTGGGG
CC consensus.IUPAC: CCMCdCCC
CC consensus.IUPAC.rc: GGGHGKGG
CC consensus.regexp: CC[AC]C[agt]CCC
CC consensus.regexp.rc: GGG[ACT]G[GT]GG
XX
//
AC MEME_ChIP_3
XX
ID MEME_ChIP_3
XX
DE ATrACAAw
P0 A C G T
1 752 0 0 0
2 0 0 0 752
3 285 121 239 107
4 752 0 0 0
5 0 752 0 0
6 752 0 0 0
7 752 0 0 0
8 393 0 0 359
XX
CC program: meme
CC matrix.nb: 4
CC id: 3
CC ac: 3
CC name: 3
CC sites: 752
CC meme.E-value: 6.0e-082
CC matrix.nb: 4
CC consensus.strict: ATaACAAa
CC consensus.strict.rc: TTTGTTAT
CC consensus.IUPAC: ATrACAAw
CC consensus.IUPAC.rc: WTTGTYAT
CC consensus.regexp: AT[ag]ACAA[at]
CC consensus.regexp.rc: [AT]TTGT[CT]AT
XX
//
AC MEME_ChIP_4
XX
ID MEME_ChIP_4
XX
DE rGGAAr
P0 A C G T
1 2323 1039 1958 0
2 0 0 5320 0
3 0 0 5320 0
4 5320 0 0 0
5 5320 0 0 0
6 2145 0 3175 0
XX
CC program: meme
CC matrix.nb: 5
CC id: 4
CC ac: 4
CC name: 4
CC sites: 5320
CC meme.E-value: 8.7e-060
CC matrix.nb: 5
CC consensus.strict: aGGAAg
CC consensus.strict.rc: CTTCCT
CC consensus.IUPAC: rGGAAr
CC consensus.IUPAC.rc: YTTCCY
CC consensus.regexp: [ag]GGAA[ag]
CC consensus.regexp.rc: [CT]TTCC[CT]
XX
//
AC MEME_ChIP_5
XX
ID MEME_ChIP_5
XX
DE TGCGCAkr
P0 A C G T
1 0 0 0 307
2 0 0 307 0
3 0 307 0 0
4 0 0 307 0
5 0 307 0 0
6 307 0 0 0
7 0 0 113 194
8 123 0 184 0
XX
CC program: meme
CC matrix.nb: 8
CC id: 7
CC ac: 7
CC name: 7
CC sites: 307
CC meme.E-value: 2.6e-037
CC matrix.nb: 8
CC consensus.strict: TGCGCAtg
CC consensus.strict.rc: CATGCGCA
CC consensus.IUPAC: TGCGCAkr
CC consensus.IUPAC.rc: YMTGCGCA
CC consensus.regexp: TGCGCA[gt][ag]
CC consensus.regexp.rc: [CT][AC]TGCGCA
XX
//
AC MEME_ChIP_6
XX
ID MEME_ChIP_6
XX
DE CAAGGTCA
P0 A C G T
1 0 236 0 0
2 236 0 0 0
3 236 0 0 0
4 0 0 236 0
5 0 0 236 0
6 0 0 0 236
7 0 183 0 53
8 236 0 0 0
XX
CC program: meme
CC matrix.nb: 9
CC id: 8
CC ac: 8
CC name: 8
CC sites: 236
CC meme.E-value: 2.3e-024
CC matrix.nb: 9
CC consensus.strict: CAAGGTCA
CC consensus.strict.rc: TGACCTTG
CC consensus.IUPAC: CAAGGTCA
CC consensus.IUPAC.rc: TGACCTTG
CC consensus.regexp: CAAGGTCA
CC consensus.regexp.rc: TGACCTTG
XX
//
AC MEME_ChIP_7
XX
ID MEME_ChIP_7
XX
DE CwGGrA
P0 A C G T
1 0 3566 0 0
2 1197 583 0 1786
3 0 0 3566 0
4 0 0 3566 0
5 1395 0 2171 0
6 3566 0 0 0
XX
CC program: meme
CC matrix.nb: 10
CC id: 9
CC ac: 9
CC name: 9
CC sites: 3566
CC meme.E-value: 1.4e-023
CC matrix.nb: 10
CC consensus.strict: CtGGgA
CC consensus.strict.rc: TCCCAG
CC consensus.IUPAC: CwGGrA
CC consensus.IUPAC.rc: TYCCWG
CC consensus.regexp: C[at]GG[ag]A
CC consensus.regexp.rc: T[CT]CC[AT]G
XX
//
AC MEME_ChIP_8
XX
ID MEME_ChIP_8
XX
DE CCkCCkCC
P0 A C G T
1 0 714 0 0
2 0 714 0 0
3 169 0 239 306
4 0 714 0 0
5 0 714 0 0
6 0 0 295 419
7 0 714 0 0
8 0 714 0 0
XX
CC program: meme
CC matrix.nb: 11
CC id: 10
CC ac: 10
CC name: 10
CC sites: 714
CC meme.E-value: 3.8e-023
CC matrix.nb: 11
CC consensus.strict: CCtCCtCC
CC consensus.strict.rc: GGAGGAGG
CC consensus.IUPAC: CCkCCkCC
CC consensus.IUPAC.rc: GGMGGMGG
CC consensus.regexp: CC[gt]CC[gt]CC
CC consensus.regexp.rc: GG[AC]GG[AC]GG
XX
//
AC MEME_ChIP_9
XX
ID MEME_ChIP_9
XX
DE CCCCwCCyCCm
P0 A C G T
1 1 57 0 0
2 0 57 0 1
3 0 58 0 0
4 8 45 5 0
5 38 1 2 17
6 0 58 0 0
7 0 57 1 0
8 0 35 3 20
9 0 47 3 8
10 0 41 6 11
11 30 25 3 0
XX
CC program: meme
CC matrix.nb: 12
CC id: 11
CC ac: 11
CC name: 11
CC sites: 58
CC meme.E-value: 2.8e-013
CC matrix.nb: 12
CC consensus.strict: CCCCaCCcCCa
CC consensus.strict.rc: TGGGGGTGGGG
CC consensus.IUPAC: CCCCwCCyCCm
CC consensus.IUPAC.rc: KGGRGGWGGGG
CC consensus.regexp: CCCC[at]CC[ct]CC[ac]
CC consensus.regexp.rc: [GT]GG[AG]GG[AT]GGGG
XX
//
AC MEME_ChIP_10
XX
ID MEME_ChIP_10
XX
DE ywTTswyATGCAaAt
P0 A C G T
1 63 847 66 390
2 579 58 28 701
3 11 50 36 1269
4 47 12 79 1228
5 118 362 823 63
6 414 18 29 905
7 206 364 186 611
8 1232 30 24 80
9 17 5 15 1329
10 10 16 1236 104
11 14 1027 129 196
12 1051 16 30 269
13 890 68 316 92
14 1204 33 75 53
15 199 119 208 840
XX
CC program: meme
CC matrix.nb: 13
CC id: 12
CC ac: 12
CC name: 12
CC sites: 1366
CC meme.E-value: 0.0e+000
CC matrix.nb: 13
CC consensus.strict: ctTTgttATGCAaAt
CC consensus.strict.rc: ATTTGCATAACAAAG
CC consensus.IUPAC: ywTTswyATGCAaAt
CC consensus.IUPAC.rc: ATTTGCATRWSAAWR
CC consensus.regexp: [ct][at]TT[cg][at][ct]ATGCAaAt
CC consensus.regexp.rc: ATTTGCAT[AG][AT][CG]AA[AT][AG]
XX
//
AC MEME_ChIP_11
XX
ID MEME_ChIP_11
XX
DE wtATGcwAATt
P0 A C G T
1 8 2 4 6
2 2 3 1 14
3 20 0 0 0
4 0 1 0 18
5 0 0 17 2
6 1 13 2 4
7 13 0 0 7
8 16 0 2 2
9 19 0 0 1
10 3 1 2 15
11 4 4 5 8
XX
CC program: meme
CC matrix.nb: 14
CC id: 13
CC ac: 13
CC name: 13
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 14
CC consensus.strict: atATGcaAATt
CC consensus.strict.rc: AATTTGCATAT
CC consensus.IUPAC: wtATGcwAATt
CC consensus.IUPAC.rc: AATTWGCATAW
CC consensus.regexp: [at]tATGc[at]AATt
CC consensus.regexp.rc: AATT[AT]GCATA[AT]
XX
//
AC MEME_ChIP_12
XX
ID MEME_ChIP_12
XX
DE awTATGcwAATk
P0 A C G T
1 10 4 3 4
2 8 2 3 8
3 1 2 1 16
4 20 0 0 0
5 0 1 0 18
6 0 0 17 2
7 0 14 2 4
8 13 0 0 7
9 17 0 1 1
10 19 0 0 0
11 2 1 1 16
12 4 3 5 8
XX
CC program: meme
CC matrix.nb: 15
CC id: 14
CC ac: 14
CC name: 14
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 15
CC consensus.strict: aaTATGcaAATt
CC consensus.strict.rc: AATTTGCATATT
CC consensus.IUPAC: awTATGcwAATk
CC consensus.IUPAC.rc: MATTWGCATAWT
CC consensus.regexp: a[at]TATGc[at]AAT[gt]
CC consensus.regexp.rc: [AC]ATT[AT]GCATA[AT]T
XX
//
AC MEME_ChIP_13
XX
ID MEME_ChIP_13
XX
DE twkTATGCWAATkmrm
P0 A C G T
1 3 4 4 9
2 5 4 3 8
3 4 3 8 6
4 2 2 1 15
5 20 0 0 0
6 0 0 0 20
7 0 0 19 1
8 0 18 0 2
9 15 0 0 5
10 18 0 0 2
11 20 0 0 0
12 0 0 0 19
13 3 3 6 8
14 9 5 2 4
15 6 3 7 4
16 8 5 4 3
XX
CC program: meme
CC matrix.nb: 16
CC id: 15
CC ac: 15
CC name: 15
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 16
CC consensus.strict: ttgTATGCAAATtaga
CC consensus.strict.rc: TCTAATTTGCATACAA
CC consensus.IUPAC: twkTATGCWAATkmrm
CC consensus.IUPAC.rc: KYKMATTWGCATAMWA
CC consensus.regexp: t[at][gt]TATGC[AT]AAT[gt][ac][ag][ac]
CC consensus.regexp.rc: [GT][CT][GT][AC]ATT[AT]GCATA[AC][AT]A
XX
//
AC MEME_ChIP_14
XX
ID MEME_ChIP_14
XX
DE ywdTATGCWAATkarm
P0 A C G T
1 3 5 4 8
2 5 4 3 7
3 5 3 7 5
4 3 2 1 15
5 20 0 0 0
6 0 0 0 19
7 0 0 18 1
8 0 18 0 2
9 15 0 0 5
10 18 0 0 2
11 20 0 0 0
12 1 0 1 19
13 4 2 5 8
14 10 4 2 4
15 7 3 7 3
16 8 5 4 3
XX
CC program: meme
CC matrix.nb: 17
CC id: 16
CC ac: 16
CC name: 16
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 17
CC consensus.strict: ttgTATGCAAATtaaa
CC consensus.strict.rc: TTTAATTTGCATACAA
CC consensus.IUPAC: ywdTATGCWAATkarm
CC consensus.IUPAC.rc: KYTMATTWGCATAHWR
CC consensus.regexp: [ct][at][agt]TATGC[AT]AAT[gt]a[ag][ac]
CC consensus.regexp.rc: [GT][CT]T[AC]ATT[AT]GCATA[ACT][AT][AG]
XX
//
AC MEME_ChIP_15
XX
ID MEME_ChIP_15
XX
DE TATGCAAAT
P0 A C G T
1 0 0 0 19
2 20 0 0 0
3 0 0 0 20
4 0 0 18 2
5 0 18 0 2
6 16 0 0 4
7 18 0 0 2
8 20 0 0 0
9 2 0 0 18
XX
CC program: meme
CC matrix.nb: 18
CC id: 17
CC ac: 17
CC name: 17
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 18
CC consensus.strict: TATGCAAAT
CC consensus.strict.rc: ATTTGCATA
CC consensus.IUPAC: TATGCAAAT
CC consensus.IUPAC.rc: ATTTGCATA
CC consensus.regexp: TATGCAAAT
CC consensus.regexp.rc: ATTTGCATA
XX
//
AC MEME_ChIP_16
XX
ID MEME_ChIP_16
XX
DE wTATGywAATkw
P0 A C G T
1 7 1 2 10
2 3 1 1 15
3 19 0 0 0
4 0 0 0 19
5 0 0 18 2
6 1 12 2 5
7 11 0 0 8
8 16 1 1 2
9 19 0 0 1
10 2 1 1 17
11 3 2 5 9
12 9 3 3 6
XX
CC program: meme
CC matrix.nb: 19
CC id: 18
CC ac: 18
CC name: 18
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 19
CC consensus.strict: tTATGcaAATta
CC consensus.strict.rc: TAATTTGCATAA
CC consensus.IUPAC: wTATGywAATkw
CC consensus.IUPAC.rc: WMATTWRCATAW
CC consensus.regexp: [at]TATG[ct][at]AAT[gt][at]
CC consensus.regexp.rc: [AT][AC]ATT[AT][AG]CATA[AT]
XX
//
AC MEME_ChIP_17
XX
ID MEME_ChIP_17
XX
DE wwTATGcwAATtw
P0 A C G T
1 11 1 3 5
2 7 1 2 10
3 2 1 1 16
4 19 0 0 1
5 0 1 1 18
6 0 0 18 1
7 0 14 2 4
8 9 0 0 11
9 17 0 1 1
10 19 0 0 0
11 1 0 0 18
12 3 2 3 13
13 8 1 2 8
XX
CC program: meme
CC matrix.nb: 20
CC id: 19
CC ac: 19
CC name: 19
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 20
CC consensus.strict: atTATGctAATta
CC consensus.strict.rc: TAATTAGCATAAT
CC consensus.IUPAC: wwTATGcwAATtw
CC consensus.IUPAC.rc: WAATTWGCATAWW
CC consensus.regexp: [at][at]TATGc[at]AATt[at]
CC consensus.regexp.rc: [AT]AATT[AT]GCATA[AT][AT]
XX
//
AC MEME_ChIP_18
XX
ID MEME_ChIP_18
XX
DE wTATGcwAATkw
P0 A C G T
1 8 1 2 9
2 2 1 1 17
3 19 0 0 0
4 0 0 0 19
5 0 0 19 1
6 1 14 2 4
7 11 0 0 9
8 19 0 0 1
9 20 0 0 0
10 1 0 0 18
11 2 2 6 11
12 11 2 2 5
XX
CC program: meme
CC matrix.nb: 21
CC id: 20
CC ac: 20
CC name: 20
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 21
CC consensus.strict: tTATGcaAATta
CC consensus.strict.rc: TAATTTGCATAA
CC consensus.IUPAC: wTATGcwAATkw
CC consensus.IUPAC.rc: WMATTWGCATAW
CC consensus.regexp: [at]TATGc[at]AAT[gt][at]
CC consensus.regexp.rc: [AT][AC]ATT[AT]GCATA[AT]
XX
//
AC MEME_ChIP_19
XX
ID MEME_ChIP_19
XX
DE awTATGcwAATkAg
P0 A C G T
1 11 2 3 4
2 9 1 2 8
3 2 1 1 16
4 19 0 0 0
5 0 1 0 19
6 0 0 18 2
7 1 14 1 4
8 12 0 0 8
9 18 0 1 1
10 20 0 0 0
11 1 0 0 19
12 2 2 6 10
13 15 1 1 2
14 4 2 11 3
XX
CC program: meme
CC matrix.nb: 22
CC id: 21
CC ac: 21
CC name: 21
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 22
CC consensus.strict: aaTATGcaAATtAg
CC consensus.strict.rc: CTAATTTGCATATT
CC consensus.IUPAC: awTATGcwAATkAg
CC consensus.IUPAC.rc: CTMATTWGCATAWT
CC consensus.regexp: a[at]TATGc[at]AAT[gt]Ag
CC consensus.regexp.rc: CT[AC]ATT[AT]GCATA[AT]T
XX
//
AC MEME_ChIP_20
XX
ID MEME_ChIP_20
XX
DE TATGCwAAT
P0 A C G T
1 2 1 0 18
2 20 0 0 0
3 0 0 0 20
4 0 0 19 0
5 0 15 1 4
6 11 0 0 8
7 18 1 1 1
8 19 0 0 0
9 1 0 0 18
XX
CC program: meme
CC matrix.nb: 23
CC id: 22
CC ac: 22
CC name: 22
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 23
CC consensus.strict: TATGCaAAT
CC consensus.strict.rc: ATTTGCATA
CC consensus.IUPAC: TATGCwAAT
CC consensus.IUPAC.rc: ATTWGCATA
CC consensus.regexp: TATGC[at]AAT
CC consensus.regexp.rc: ATT[AT]GCATA
XX
//
AC MEME_ChIP_21
XX
ID MEME_ChIP_21
XX
DE tATGcwAAT
P0 A C G T
1 2 3 1 14
2 20 0 0 0
3 0 1 0 18
4 1 0 16 3
5 1 13 2 5
6 13 0 0 7
7 17 0 2 2
8 19 0 0 0
9 3 1 1 15
XX
CC program: meme
CC matrix.nb: 24
CC id: 23
CC ac: 23
CC name: 23
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 24
CC consensus.strict: tATGcaAAT
CC consensus.strict.rc: ATTTGCATA
CC consensus.IUPAC: tATGcwAAT
CC consensus.IUPAC.rc: ATTWGCATA
CC consensus.regexp: tATGc[at]AAT
CC consensus.regexp.rc: ATT[AT]GCATA
XX
//
AC MEME_ChIP_22
XX
ID MEME_ChIP_22
XX
DE mKkTTkyTkTkTttwkwwkG
P0 A C G T
1 8 13 5 1
2 0 0 7 20
3 1 2 10 14
4 1 0 5 21
5 1 2 0 24
6 1 4 8 14
7 0 12 5 10
8 0 0 2 25
9 2 0 7 18
10 0 0 0 27
11 0 0 14 13
12 0 0 0 27
13 6 1 6 14
14 5 5 0 17
15 9 0 5 13
16 0 5 7 15
17 13 0 1 13
18 10 0 0 17
19 6 0 9 12
20 0 3 19 5
XX
CC program: meme
CC matrix.nb: 25
CC id: 24
CC ac: 24
CC name: 24
CC sites: 27
CC meme.E-value: 7.1e-004
CC matrix.nb: 25
CC consensus.strict: cTtTTtcTtTgTttttattG
CC consensus.strict.rc: CAATAAAAACAAAGAAAAAG
CC consensus.IUPAC: mKkTTkyTkTkTttwkwwkG
CC consensus.IUPAC.rc: CMWWMWAAAMAMARMAAMMK
CC consensus.regexp: [ac][GT][gt]TT[gt][ct]T[gt]T[gt]Ttt[at][gt][at][at][gt]G
CC consensus.regexp.rc: C[AC][AT][AT][AC][AT]AAA[AC]A[AC]A[AG][AC]AA[AC][AC][GT]
XX
//
AC MEME_ChIP_23
XX
ID MEME_ChIP_23
XX
DE ykmATTTGCATrw
P0 A C G T
1 415 635 402 835
2 530 266 593 898
3 605 825 415 442
4 2016 19 1 251
5 0 0 0 2287
6 256 2 0 2029
7 0 0 0 2287
8 158 0 1997 132
9 0 2271 0 16
10 2257 30 0 0
11 0 2 0 2285
12 1159 39 613 476
13 594 361 107 1225
XX
CC program: meme
CC matrix.nb: 26
CC id: 25
CC ac: 25
CC name: 25
CC sites: 2287
CC meme.E-value: 0.0e+000
CC matrix.nb: 26
CC consensus.strict: ttcATTTGCATat
CC consensus.strict.rc: ATATGCAAATGAA
CC consensus.IUPAC: ykmATTTGCATrw
CC consensus.IUPAC.rc: WYATGCAAATKMR
CC consensus.regexp: [ct][gt][ac]ATTTGCAT[ag][at]
CC consensus.regexp.rc: [AT][CT]ATGCAAAT[GT][AC][AG]
XX
//
AC MEME_ChIP_24
XX
ID MEME_ChIP_24
XX
DE TATGywAAT
P0 A C G T
1 2 3 1 15
2 19 0 0 0
3 1 1 0 18
4 0 0 16 3
5 0 13 2 5
6 13 0 0 7
7 16 0 2 2
8 19 0 0 1
9 2 1 1 16
XX
CC program: meme
CC matrix.nb: 27
CC id: 26
CC ac: 26
CC name: 26
CC sites: 20
CC meme.E-value: 0.0e+000
CC matrix.nb: 27
CC consensus.strict: TATGcaAAT
CC consensus.strict.rc: ATTTGCATA
CC consensus.IUPAC: TATGywAAT
CC consensus.IUPAC.rc: ATTWRCATA
CC consensus.regexp: TATG[ct][at]AAT
CC consensus.regexp.rc: ATT[AT][AG]CATA
XX
//
AC MEME_ChIP_25
XX
ID MEME_ChIP_25
XX
DE aTtwGCATawsAAwr
P0 A C G T
1 86 13 13 23
2 5 4 0 126
3 23 18 6 88
4 40 11 1 83
5 31 2 101 1
6 20 111 0 4
7 131 0 1 3
8 9 0 0 126
9 66 20 27 22
10 78 7 0 50
11 7 66 43 19
12 111 19 0 5
13 125 3 4 3
14 46 2 1 86
15 41 8 69 17
XX
CC program: meme
CC matrix.nb: 2
CC id: 1
CC ac: 1
CC name: 1
CC sites: 135
CC meme.E-value: 9.9e-122
CC matrix.nb: 2
CC consensus.strict: aTttGCATaacAAtg
CC consensus.strict.rc: CATTGTTATGCAAAT
CC consensus.IUPAC: aTtwGCATawsAAwr
CC consensus.IUPAC.rc: YWTTSWTATGCWAAT
CC consensus.regexp: aTt[at]GCATa[at][cg]AA[at][ag]
CC consensus.regexp.rc: [CT][AT]TT[CG][AT]TATGC[AT]AAT
XX
//