From b717f40cbb93d72369deb19c7c65427baada044e Mon Sep 17 00:00:00 2001 From: Daniel Cooke Date: Fri, 30 Aug 2019 10:59:45 +0100 Subject: [PATCH] Add "P" special Number character for FORMAT Specifies that the number of values is the sample ploidy (i.e. the number of GT entries). --- VCFv4.3.pdf | Bin 805347 -> 806506 bytes VCFv4.3.tex | 7 ++++++- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/VCFv4.3.pdf b/VCFv4.3.pdf index cfecc93ddb853df91001188415e4c3e8cb03a33a..287d0193f27910a4017d8f872e8b49b9f87d0d14 100644 GIT binary patch delta 12048 zcma)?Q*>o*x9797W7{?>wpFohr*>>($F|LiT`?-QZB?aWR$O7%_r2qE_c-T_(|s{7 z=2-K${?Ei%7jr%PDQu^?Yz<}50G^a<6b7(+N`HJVD^mE?3l<+tC43Y)`AKcpsm5tb z$@gXZEUnPC@W63J!-Jms%E8GWwTIX^gA5Lr-+sp$?Ij|h z&uv9#vxcEGDk3G`_H40?gXrL_)gMIQCV+Hi?aMxCvtKn0K#Dr0?fs7cQDiq4@(1~E zjL%wurEeI?h08x?|HKXAx%eEZc9()L{7;WkiCx9d4v9o+f7Cv#?`nHz23~7P7LtAj zTDPlUD}A5g9P&aen7m;h`4RB5wqRnf?D&lcY_nn6CzU=Y+t&U;&kuT> z0kInpg$8vwe7WJt)n+M)9X{gRW1$>hLx(hxco#JCXGsR_%SxQQ!p1Jocr}fQC 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This field is otherwise defined as the INFO field, with the addition of special characters used to define the Number entry: + +\begin{itemize} + \item P: The field has one value per GT entry (i.e. ploidy), or zero if GT is missing. + The values must be in the same order as listed in the GT field. +\end{itemize} \subsubsection{Alternative allele field format} Symbolic alternate alleles are described as follows: