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Issue warning if more alternate alleles than max_alt_alleles when reading VCF #487

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tomwhite opened this issue Mar 9, 2021 · 0 comments · Fixed by #620
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Issue warning if more alternate alleles than max_alt_alleles when reading VCF #487

tomwhite opened this issue Mar 9, 2021 · 0 comments · Fixed by #620
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IO Issues related to reading and writing common third-party file formats

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tomwhite commented Mar 9, 2021

From https://github.com/pystatgen/sgkit/pull/471#discussion_r586239899:

Users should know if their ALTs are being dropped, and ideally it should be discoverable later if they have been truncated. Could we add some metadata tracking when this has happened?
@tomwhite tomwhite added the IO Issues related to reading and writing common third-party file formats label Mar 9, 2021
@tomwhite tomwhite mentioned this issue Mar 9, 2021
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@tomwhite tomwhite mentioned this issue Jul 6, 2021
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@mergify mergify bot closed this as completed in #620 Jul 29, 2021
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Issue a warning if the number of alt alleles exceeds the maximum specified tomwhite/sgkit
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