From 4fbcead0f2de6fb722ff0d550139765c540de334 Mon Sep 17 00:00:00 2001 From: Sigve Nakken Date: Fri, 2 Aug 2024 18:17:45 +0200 Subject: [PATCH] =?UTF-8?q?Bump=20version:=201.4.2=20=E2=86=92=201.5.0?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- .github/workflows/pkgdown.yaml | 2 +- DESCRIPTION | 2 +- README.md | 2 +- pkgdown/index.md | 2 +- vignettes/installation.Rmd | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 00a0ecc..be77ac8 100755 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.4.2 +current_version = 1.5.0 commit = True tag = False diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index dece3da..b74373e 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - VERSION: '1.4.2' #versioned by bump2version + VERSION: '1.5.0' #versioned by bump2version name: pkgdown diff --git a/DESCRIPTION b/DESCRIPTION index 15acfb1..0bcea19 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: oncoEnrichR Type: Package Title: Cancer-dedicated gene set interpretation -Version: 1.4.2 +Version: 1.5.0 Authors@R: person(given = "Sigve", family = "Nakken", role = c("aut", "cre"), email = "sigven@ifi.uio.no", comment = c(ORCID = "0000-0001-8468-2050")) diff --git a/README.md b/README.md index 5da4f32..e26cfd6 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ **oncoEnrichR** is an R package for functional interrogation of human gene lists in the context of cancer. The package leverages an extensive amount of prior molecular knowledge that allows for biological interpretation along multiple dimensions, both at the systems level and at the level of individual genes. -Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.4.2) +Web-based access to **oncoEnrichR** is available at [**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.5.0) **oncoEnrichR** is primarily intended for exploratory analysis and prioritization of a gene list (referred to here as **query set**) from high-throughput cancer biology experiments, e.g. CRISPR screens, protein proximity labeling, or gene expression profiling. The tool queries a number of high-quality data resources in order to assemble cancer-relevant annotations and analyses in an interactive report. diff --git a/pkgdown/index.md b/pkgdown/index.md index b44644d..0865a46 100644 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -21,7 +21,7 @@ data resources in order to assemble useful gene annotations and analyses in an interactive report (examples from the report shown below). Web-based access to **oncoEnrichR** is available at -[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.4.2) +[**https://oncotools.elixir.no**](https://oncotools.elixir.no/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fsigven%2Foncoenrichr%2Foncoenrichr_wrapper%2F1.5.0)
diff --git a/vignettes/installation.Rmd b/vignettes/installation.Rmd index 5e576b9..8359590 100644 --- a/vignettes/installation.Rmd +++ b/vignettes/installation.Rmd @@ -14,7 +14,7 @@ vignette: > ## Installation of oncoEnrichR with R commands 1. `install.packages('remotes')` -2. `remotes::install_github('sigven/oncoEnrichR', ref = "v1.4.2")` +2. `remotes::install_github('sigven/oncoEnrichR', ref = "v1.5.0")` 3. `library(oncoEnrichR)`