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Our little Phylotree loader module (https://github.com/statonlab/phylotree_loader_cmd) allows users to run a drush command to load all phylotrees in a directory. It automatically adds a title and appends the file as a description in the page. We want to extract the feature cvterms and add them to the description under the file.
Once the loader finishes loading a tree, grab it's ID (note that tree names are unique so you can search by name).
Chado has a table (something along the lines of phylotreee_node) that has a feature_id linking each feature in the tree to the tree. By grabbing these feeatures we can get all their cvterms.
Presentation: Only unique cv terms should be presented. If possible, they should be linked to the cvterm page. For easy scanning, the cvterms should be in a table:
Controlled Vocabulary
Term
Description
chado.cv.name
chado.cvterm.name
chado.cvterm.description
Note that that this table should go to chado.phylotree.comment table.
Link to relevant info
The text was updated successfully, but these errors were encountered:
Feature description
Our little Phylotree loader module (https://github.com/statonlab/phylotree_loader_cmd) allows users to run a drush command to load all phylotrees in a directory. It automatically adds a title and appends the file as a description in the page. We want to extract the feature cvterms and add them to the description under the file.
Note that that this table should go to chado.phylotree.comment table.
Link to relevant info
The text was updated successfully, but these errors were encountered: