Ensafen short read chaining preset #4488
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This renames the "sr" preset so it is more clearly using chaining and not the recommended short read mode. It also stops you from accidentally using chaining presets or the chaining flag with paired-end inputs, which can't actually run on the chaining codepath.
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Changelog Entry
To be copied to the draft changelog by merger:
chaining-srand locked out for paired end inputsDescription
This renames the "sr" preset so it is more clearly using chaining and not the recommended short read mode. It also stops you from accidentally using chaining presets or the chaining flag with paired-end inputs, which can't actually run on the chaining codepath.