You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
df = model_utils.reformat_classification_pipeline_preds(tcrbert_trb_cls([
"C A S S P V T G G I Y G Y T F", # Binds to NLVPMVATV CMV antigen
"C A T S G R A G V E Q F F", # Binds to GILGFVFTL flu antigen
])) Is there any decoder that can decode the dataframe's output? Maybe like
'model = BertModel.from_pretrained("wukevin/tcr-bert").to(device)
tokenizer = BertTokenizer.from_pretrained("wukevin/tcr-bert")
outputs = model.decoder(embedding_tensor)
logits = outputs.logits
predicted_ids = torch.argmax(logits, dim=-1)
`import model_utils # found under the "tcr" folder
tcrbert_trb_cls = model_utils.load_classification_pipeline("wukevin/tcr-bert", device=0)
df = model_utils.reformat_classification_pipeline_preds(tcrbert_trb_cls([
"C A S S P V T G G I Y G Y T F", # Binds to NLVPMVATV CMV antigen
"C A T S G R A G V E Q F F", # Binds to GILGFVFTL flu antigen
]))
Is there any decoder that can decode the dataframe's output? Maybe like
'model = BertModel.from_pretrained("wukevin/tcr-bert").to(device)
tokenizer = BertTokenizer.from_pretrained("wukevin/tcr-bert")
outputs = model.decoder(embedding_tensor)
logits = outputs.logits
predicted_ids = torch.argmax(logits, dim=-1)
decoded_seq = tokenizer.decode(predicted_ids[0], skip_special_tokens=True)
decoded_sequences.append(decoded_seq)`
The text was updated successfully, but these errors were encountered: