missed argument name

AlexsLemonade · Nov 11, 2024 · 80132e6 · 80132e6
1 parent 627af56
commit 80132e6
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diff --git a/analyses/cell-type-ETP-ALL-03/scripts/05_cluster_evaluation.R b/analyses/cell-type-ETP-ALL-03/scripts/05_cluster_evaluation.R
@@ -18,7 +18,7 @@ run_eval <- function(ind.lib) {
     summarise(avgSil = mean(silhouette_width), avgPur = mean(purity)) %>%
     data.frame()
   stability_df <- rOpenScPCA::calculate_stability(
-    x = seu, clusters = clusID.df,
+    x = seu, cluster_df = clusID.df,
     pc_name = "Xpca_", algorithm = "leiden",
     resolution = 1.0, objective_function = "modularity",
     seed = 10

diff --git a/analyses/cell-type-nonETP-ALL-03/scripts/05_cluster_evaluation.R b/analyses/cell-type-nonETP-ALL-03/scripts/05_cluster_evaluation.R
@@ -19,7 +19,7 @@ run_eval <- function(ind.lib) {
     summarise(avgSil = mean(silhouette_width), avgPur = mean(purity)) %>%
     data.frame()
   stability_df <- rOpenScPCA::calculate_stability(
-    x = seu, clusters = clusID.df,
+    x = seu, cluster_df = clusID.df,
     pc_name = "Xpca_", algorithm = "leiden",
     resolution = 1.0, objective_function = "modularity",
     seed = 10