BioInformatics-Project

Required

Library needed :

• numpy
• scipy
• biopython
• keras
• h5py

Program needed:

• Blast+

Folder:

• data : with the training set (fasta file)
• db : with a NR-DataBase
• dbCoil : with a NR-DataBase filtred
• profile : to save all profiles
• temp : for temp file
• model : to save the weights of the different models
• table : contains results

How to run

You need to be in the BioInformatics-Project folder and then execute this command :

• python3 script/psiBlast.py
• python3 script/main.py