Deploying to gh-pages from @ 9f6af69 🚀

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 75b836b4db5748e8ad00c0b6d8010a80
+config: 6b1c8af229374d10a63d5e4da33bc228
 tags: 645f666f9bcd5a90fca523b33c5a78b7

_modules/genomicranges/GenomicRanges.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.GenomicRanges - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.GenomicRanges - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -504,15 +504,14 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>
             <span class="n">seqnames</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">asarray</span><span class="p">([</span><span class="bp">self</span><span class="o">.</span><span class="n">_reverse_seqindex</span><span class="p">[</span><span class="n">x</span><span class="p">]</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">seqnames</span><span class="p">])</span>
 
             <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">seqnames</span><span class="p">)</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
-                <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int8</span><span class="p">)</span>
+                <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">)</span>
             <span class="k">else</span><span class="p">:</span>
                 <span class="n">num_uniq</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">max</span><span class="p">(</span><span class="n">seqnames</span><span class="p">)</span>
-                <span class="k">if</span> <span class="n">num_uniq</span> <span class="o">&lt;</span> <span class="mi">2</span><span class="o">**</span><span class="mi">8</span><span class="p">:</span>
-                    <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int8</span><span class="p">)</span>
-                <span class="k">elif</span> <span class="n">num_uniq</span> <span class="o">&lt;</span> <span class="mi">2</span><span class="o">**</span><span class="mi">16</span><span class="p">:</span>
-                    <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int16</span><span class="p">)</span>
-                <span class="k">elif</span> <span class="n">num_uniq</span> <span class="o">&lt;</span> <span class="mi">2</span><span class="o">**</span><span class="mi">32</span><span class="p">:</span>
-                    <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">int32</span><span class="p">)</span>
+                <span class="n">_types</span> <span class="o">=</span> <span class="p">[</span><span class="n">np</span><span class="o">.</span><span class="n">uint8</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">uint16</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">uint32</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">uint64</span><span class="p">]</span>
+                <span class="k">for</span> <span class="n">_dtype</span> <span class="ow">in</span> <span class="n">_types</span><span class="p">:</span>
+                    <span class="k">if</span> <span class="n">num_uniq</span> <span class="o">&lt;</span> <span class="n">np</span><span class="o">.</span><span class="n">iinfo</span><span class="p">(</span><span class="n">_dtype</span><span class="p">)</span><span class="o">.</span><span class="n">max</span><span class="p">:</span>
+                        <span class="n">seqnames</span> <span class="o">=</span> <span class="n">seqnames</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">_dtype</span><span class="p">)</span>
+                        <span class="k">break</span>
 
         <span class="k">return</span> <span class="n">seqnames</span>
 
@@ -3675,7 +3674,7 @@ <h1>Source code for genomicranges.GenomicRanges</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/genomicranges/GenomicRangesList.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.GenomicRangesList - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.GenomicRangesList - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -1322,7 +1322,7 @@ <h1>Source code for genomicranges.GenomicRangesList</h1><div class="highlight"><
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/genomicranges/SeqInfo.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.SeqInfo - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.SeqInfo - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -1011,7 +1011,7 @@ <h1>Source code for genomicranges.SeqInfo</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/genomicranges/io/gtf.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.io.gtf - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.io.gtf - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -434,7 +434,7 @@ <h1>Source code for genomicranges.io.gtf</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/genomicranges/io/ucsc.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../../genindex.html" /><link rel="search" title="Search" href="../../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.io.ucsc - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.io.ucsc - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -365,7 +365,7 @@ <h1>Source code for genomicranges.io.ucsc</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/genomicranges/utils.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>genomicranges.utils - GenomicRanges 0.4.33 documentation</title>
+        <title>genomicranges.utils - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -527,7 +527,7 @@ <h1>Source code for genomicranges.utils</h1><div class="highlight"><pre>
 
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../../_static/doctools.js?v=9a2dae69"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=5fa4622c"></script>

_modules/index.html

@@ -5,7 +5,7 @@
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
     <!-- Generated with Sphinx 7.4.7 and Furo 2024.08.06 -->
-        <title>Overview: module code - GenomicRanges 0.4.33 documentation</title>
+        <title>Overview: module code - GenomicRanges 0.4.34 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=354aac6f" />
     <link rel="stylesheet" type="text/css" href="../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css" />
@@ -166,7 +166,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">GenomicRanges 0.4.33 documentation</div></a>
+      <a href="../index.html"><div class="brand">GenomicRanges 0.4.34 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -190,7 +190,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
 
 
-  <span class="sidebar-brand-text">GenomicRanges 0.4.33 documentation</span>
+  <span class="sidebar-brand-text">GenomicRanges 0.4.34 documentation</span>
 
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -300,7 +300,7 @@ <h1>All modules for which code is available</h1>
 
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=1d4338a0"></script>
+</div><script src="../_static/documentation_options.js?v=d6caa86d"></script>
     <script src="../_static/doctools.js?v=9a2dae69"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=5fa4622c"></script>

_sources/changelog.md.txt

@@ -1,9 +1,10 @@
 # Changelog
 
-## Version 0.4.32
+## Version 0.4.32 - 0.4.33
 
 - Bump IRanges package version to fix coercion issues to pandas.
 - Remove reverse mapping in iranges in `reduce` operation.
+- Fixes issue with combine merging sequence names without properly using the accessor methods.
 
 ## Version 0.4.27 - 0.4.31
 

_static/documentation_options.js

@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.4.33',
+    VERSION: '0.4.34',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',