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This file is used in a bit less than 4000 notebooks. I've tried to remap the functions to their CLI equivalents. Some of the functions originally in this file separated file upload from some other function, like dataset creation. Since the CLI functions manage the upload, I did not implement those functions here, but left instructions on what to use instead. Not ideal, but we don't want the files getting uploaded twice. This is completely untested, and I hope to fix that soon. The main items that need testing are those that write a metadata file, or have a large number of parameters.
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