Installs and runs pre-commit hooks

environment.yml

@@ -1,4 +1,4 @@
-name: hdbo_benchmark 
+name: hdbo_benchmark
 channels:
   - defaults
 dependencies:

envs/environment.bounce.yml

@@ -1,4 +1,4 @@
-name: hdbo_bounce 
+name: hdbo_bounce
 channels:
   - defaults
 dependencies:

pyproject.toml

@@ -52,6 +52,9 @@ warn_return_any = true
 warn_unused_configs = true
 ignore_missing_imports = true
 
+[tool.isort]
+profile = "black"
+
 [tool.pytest.ini_options]
 markers = [
     "hdbo_base: base tests for HDBO",

run.py

@@ -10,26 +10,24 @@
 
 import click
 import numpy as np
-
-from poli.core.util.seeding import seed_python_numpy_and_torch
 from poli.core.exceptions import BudgetExhaustedException
+from poli.core.util.seeding import seed_python_numpy_and_torch
 
-from hdbo_benchmark.utils.experiments.load_solvers import (
-    load_solver_from_problem,
-    SOLVER_NAMES,
-    CONTINUOUS_SPACE_SOLVERS,
-)
-from hdbo_benchmark.utils.experiments.load_problems import load_problem
 from hdbo_benchmark.utils.experiments.load_generative_models import (
     load_generative_model_and_bounds,
 )
-from hdbo_benchmark.utils.experiments.verify_status_pre_experiment import (
-    verify_repos_are_clean,
+from hdbo_benchmark.utils.experiments.load_problems import load_problem
+from hdbo_benchmark.utils.experiments.load_solvers import (
+    CONTINUOUS_SPACE_SOLVERS,
+    SOLVER_NAMES,
+    load_solver_from_problem,
 )
 from hdbo_benchmark.utils.experiments.problem_transformations import (
     transform_problem_from_discrete_to_continuous,
 )
-
+from hdbo_benchmark.utils.experiments.verify_status_pre_experiment import (
+    verify_repos_are_clean,
+)
 from hdbo_benchmark.utils.logging.idempotence_of_experiments import (
     experiment_has_already_run,
 )

setup.cfg

@@ -21,4 +21,4 @@ include_package_data = True
 where=src
 
 [options.package_data]
-* = *.sht, *.yml, *.jar, *.pt, *.json, *.pdb, *.npz 
+* = *.sht, *.yml, *.jar, *.pt, *.json, *.pdb, *.npz

src/hdbo_benchmark/sanity_checks/bayesian_optimization_in_2d.py

@@ -5,7 +5,6 @@
 
 import warnings
 
-
 import matplotlib.pyplot as plt
 import numpy as np
 from poli import objective_factory  # type: ignore

src/hdbo_benchmark/utils/ax/interface.py

@@ -1,9 +1,5 @@
 import numpy as np
-from ax import (  # type: ignore[import]
-    ParameterType,
-    RangeParameter,
-    SearchSpace,
-)
+from ax import ParameterType, RangeParameter, SearchSpace  # type: ignore[import]
 from ax.core.generator_run import GeneratorRun  # type: ignore[import]
 from ax.core.metric import Metric  # type: ignore[import]
 from ax.metrics.noisy_function import NoisyFunctionMetric  # type: ignore[import]

src/hdbo_benchmark/utils/visualization/plot_optima_comparison.py

@@ -2,7 +2,6 @@
 import pandas as pd
 import seaborn as sns  # type: ignore[import]
 
-
 from hdbo_benchmark.utils.data.experiments import load_results_as_dataframe
 
 from .colors import COLORS

test_main_entry_point.py

@@ -1,15 +1,13 @@
 import os
 
 import pytest
-
-from run import _main
-
 from poli.benchmarks import PMOBenchmark
 
 from hdbo_benchmark.utils.experiments.load_solvers import (
-    SOLVER_NAMES,
     SOLVER_NAME_TO_ENV,
+    SOLVER_NAMES,
 )
+from run import _main
 
 SOLVERS_THAT_RUN_IN_BASE_ENV = [
     solver_name

workflows/website.yml

@@ -36,7 +36,7 @@ jobs:
       - name: Install Hugo CLI
         run: |
           wget -O ${{ runner.temp }}/hugo.deb https://github.com/gohugoio/hugo/releases/download/v${HUGO_VERSION}/hugo_extended_${HUGO_VERSION}_linux-amd64.deb \
-          && sudo dpkg -i ${{ runner.temp }}/hugo.deb          
+          && sudo dpkg -i ${{ runner.temp }}/hugo.deb
       - name: Install Dart Sass
         run: sudo snap install dart-sass
       - name: Checkout
@@ -59,7 +59,7 @@ jobs:
           hugo \
             --gc \
             --minify \
-            --baseURL "${{ steps.pages.outputs.base_url }}/"          
+            --baseURL "${{ steps.pages.outputs.base_url }}/"
       - name: Upload artifact
         uses: actions/upload-pages-artifact@v3
         with: