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Added onlince use documentation #60

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Jul 19, 2024
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Added onlince use documentation #60

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10 changes: 10 additions & 0 deletions docs/faq.rst
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Expand Up @@ -162,6 +162,16 @@ Please follow this simple procedure:
* If you believe the problem is in PhysioFit or that your local system administrator
told you so, then you probably have found a bug! We would greatly appreciate
if you could open a new issue on our `issue tracker <https://github.com/MetaSys-LISBP/PhysioFit/issues>`_.

I have trouble finding PhysioFit on the Workflow4Metabolomics Galaxy instance
------------------------------------------------------------------------------

To help users navigate through the Workflow4Metabolomics Galaxy instance, we
have prepared a short tutorial on how to find and use PhysioFit. You can find
it in the :doc:`quickstart` section.
If you still have trouble finding PhysioFit, a search bar is available on the
top left of the page. You can type "PhysioFit" in the search bar and click on
the result to access the tool.

I have develop a new model, can you include it in PhysioFit distribution?
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20 changes: 20 additions & 0 deletions docs/quickstart.rst
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Expand Up @@ -47,6 +47,26 @@ Here after the available options with their full names are enumerated and detail
:prog: physiofit
:nodescription:


Online use
----------

PhysioFit is available for use online on the `Workflow4Metabolomics Galaxy
instance <https://workflow4metabolomics.usegalaxy.fr/>`_ (W4M). The tool can
be found in the "Isotopic Studies" section. PhysioFit on W4M leverages the
configuration file feature to allow users to run the tool without having to
input parameters through the Graphical User Interface. To run the tool, load
the dataset and the configuration file, and click on "Run". It's as simple
as that.

W4M also enables the creation of automated workflows, enabling users to
build their own data processing pipelines. PhysioFit was designed to make
this process as straightforward as possible, by limiting interaction with
the GUI and by using the configuration file to set up run parameters. For
more information on using and building workflows on the W4M platform, please
check the `galaxy training network <https://training.galaxyproject.org/>`_.


Library
-------

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