Process completed with exit code 1.

processing vignette 'article.Rmd' failed with diagnostics:

processing vignette 'dar.Rmd' failed with diagnostics:

processing vignette 'import_export_recipes.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'dar' from local:

Process completed with exit code 1.

No such keg: /opt/homebrew/Cellar/[email protected]

--- re-building ‘article.Rmd’ using rmarkdown

processing vignette 'article.Rmd' failed with diagnostics:

processing vignette 'dar.Rmd' failed with diagnostics:

processing vignette 'import_export_recipes.Rmd' failed with diagnostics:

Vignette re-building failed.

Failed to install 'dar' from local:

Process completed with exit code 1.

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

No files were found with the provided path: check. No artifacts will be uploaded.

No files were found with the provided path: check. No artifacts will be uploaded.

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

No files were found with the provided path: check. No artifacts will be uploaded.

pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf

HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!

The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.

harfbuzz 10.1.0 is already installed and up-to-date. To reinstall 10.1.0, run: brew reinstall harfbuzz

fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi