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AGAT-v1.3.0
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@Juke34 Juke34 released this 23 Feb 14:26
· 37 commits to master since this release
v1.3.0
aa61c74
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What's Changed

  • Clean_clone by @Juke34 in #384 : add a clean_clone function to clean GFF feature while cloning it (e.g. when used as a template to create another feature). add clean_attributes_from_template parameter in agat_config.yaml to activate it.
  • fix #383 by @Juke34 in #402 : -agat_convert_sp_gff2bed.pl was throwing Can't "continue" outside a when block error when using -nc parameter
  • fix #389 by @Juke34 in #403: fix a case that ended up with feature wihtout ID and add test
  • fix nex readthedocs requirements by @Juke34 in #414
  • New script to move feature from features of a same record (agat_sp_move_attributes_within_records) by @Juke34 in #413
  • agat_sp_manage_IDs.pl not sorting feature consistently fix #411 by @Juke34 in #415
  • agat_sp_separate_by_record_type.pl not sorting features consistently by @Juke34 in #423
  • fix 424 - bug in agat_sp_complement_annotations.pl / check_feature_overlap_from_l3_to_l1 by @Juke34 in #425
  • update agat_sp_add_start_and_stop.pl by @Juke34 in #429. Now handle GTF case (stop codon out of the CDS), allow CDS extension to find the first start/stop codon, and possibility to skip codon with IUPAC nucleotide to avoid NNN to be seen as a start or stop codon.
  • Update doc by @Juke34 in #432

Full Changelog: v1.2.0...v1.3.0

Contributors

Juke34
Assets 2
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