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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| ToxicR/.RData | ||
| ToxicR/BMDS.Rproj | ||
| ToxicR/DESCRIPTION | ||
| ToxicR/NAMESPACE | ||
| ToxicR/R/.Rhistory | ||
| ToxicR/R/Build_Priors.R | ||
| ToxicR/R/MAdensity_plot.R | ||
| ToxicR/R/NTP.R | ||
| ToxicR/R/RcppExports.R | ||
| ToxicR/R/TOXICR_GLOBALS.R | ||
| ToxicR/R/cleveland_plot.R | ||
| ToxicR/R/cont_functions.R | ||
| ToxicR/R/continuous_clean.R | ||
| ToxicR/R/continuous_plots.R | ||
| ToxicR/R/continuous_pvalue.R | ||
| ToxicR/R/continuous_wrappers.R | ||
| ToxicR/R/dicho_functions.R | ||
| ToxicR/R/dichotomous_plots.R | ||
| ToxicR/R/dichotomous_wrappers.R | ||
| ToxicR/R/model_averaging_fits.R | ||
| ToxicR/R/model_averaging_lists.R | ||
| ToxicR/R/opening_messages.R | ||
| ToxicR/R/prior_classes.R | ||
| ToxicR/data/williamCrits.RData | ||
| ToxicR/man/MAdensity_plot.Rd | ||
| ToxicR/man/NTP.Rd | ||
| ToxicR/man/cleveland_plot.Rd | ||
| ToxicR/man/ma_continuous_fit.Rd | ||
| ToxicR/man/ma_dichotomous_fit.Rd | ||
| ToxicR/man/single_continuous_fit.Rd | ||
| ToxicR/man/single_dichotomous_fit.Rd | ||
| ToxicR/src/.Rhistory | ||
| ToxicR/src/Makevars | ||
| ToxicR/src/Makevars.win | ||
| ToxicR/src/RcppExports.cpp | ||
| ToxicR/src/code_base/.DS_Store | ||
| ToxicR/src/code_base/.Rhistory | ||
| ToxicR/src/code_base/DichGammaBMD_NC.cpp | ||
| ToxicR/src/code_base/DichLogProbitBMD_NC.cpp | ||
| ToxicR/src/code_base/DichLogisticBMD_NC.cpp | ||
| ToxicR/src/code_base/DichProbitBMD_NC.cpp | ||
| ToxicR/src/code_base/DichQlinearBMD_NC.cpp | ||
| ToxicR/src/code_base/DichWeibullBMD_NC.cpp | ||
| ToxicR/src/code_base/IDPrior.cpp | ||
| ToxicR/src/code_base/IDPriorMCMC.cpp | ||
| ToxicR/src/code_base/Makefile.am | ||
| ToxicR/src/code_base/analysis_of_deviance.cpp | ||
| ToxicR/src/code_base/analysis_of_deviance.h | ||
| ToxicR/src/code_base/bmdStruct.cpp | ||
| ToxicR/src/code_base/bmdStruct.h | ||
| ToxicR/src/code_base/continuous_clean_aux.cpp | ||
| ToxicR/src/code_base/continuous_clean_aux.h | ||
| ToxicR/src/code_base/continuous_entry_code.cpp | ||
| ToxicR/src/code_base/continuous_entry_code.h | ||
| ToxicR/src/code_base/continuous_model_functions.cpp | ||
| ToxicR/src/code_base/continuous_model_functions.h | ||
| ToxicR/src/code_base/dichotomous_entry_code.cpp | ||
| ToxicR/src/code_base/dichotomous_entry_code.h | ||
| ToxicR/src/code_base/gradient.cpp | ||
| ToxicR/src/code_base/gradient.h | ||
| ToxicR/src/code_base/helperfunctions.cpp | ||
| ToxicR/src/code_base/list_r_conversion.h | ||
| ToxicR/src/code_base/lognormalModels.cpp | ||
| ToxicR/src/code_base/lognormal_EXP_NC.cpp | ||
| ToxicR/src/code_base/lognormal_HILL_NC.cpp | ||
| ToxicR/src/code_base/lognormal_POLYNOMIAL_NC.cpp | ||
| ToxicR/src/code_base/lognormal_POWER_NC.cpp | ||
| ToxicR/src/code_base/normalModels.cpp | ||
| ToxicR/src/code_base/normal_EXP_NC.cpp | ||
| ToxicR/src/code_base/normal_FUNL_NC.cpp | ||
| ToxicR/src/code_base/normal_HILL_NC.cpp | ||
| ToxicR/src/code_base/normal_POLYNOMIAL_NC.cpp | ||
| ToxicR/src/code_base/normal_POWER_NC.cpp | ||
| ToxicR/src/code_base/normal_likelihoods.cpp | ||
| ToxicR/src/code_base/stdafx.cpp | ||
| ToxicR/src/code_base/stdafx.h | ||
| ToxicR/src/code_base/targetver.h | ||
| ToxicR/src/include/.Rhistory | ||
| ToxicR/src/include/DichGammaBMD_NC.h | ||
| ToxicR/src/include/DichHillBMD_NC.h | ||
| ToxicR/src/include/DichLogLogisticBMD_NC.h | ||
| ToxicR/src/include/DichLogProbitBMD_NC.h | ||
| ToxicR/src/include/DichLogisticBMD_NC.h | ||
| ToxicR/src/include/DichMultistageBMD_NC.h | ||
| ToxicR/src/include/DichProbitBMD_NC.h | ||
| ToxicR/src/include/DichQlinearBMD_NC.h | ||
| ToxicR/src/include/DichWeibullBMD_NC.h | ||
| ToxicR/src/include/IDPrior.h | ||
| ToxicR/src/include/IDPriorMCMC.h | ||
| ToxicR/src/include/binomModels.h | ||
| ToxicR/src/include/binomialTests.h | ||
| ToxicR/src/include/bmd_calculate.h | ||
| ToxicR/src/include/bmds_entry.h | ||
| ToxicR/src/include/cBMDstatmod.h | ||
| ToxicR/src/include/cmodeldefs.h | ||
| ToxicR/src/include/dBMDstatmod.h | ||
| ToxicR/src/include/log_likelihoods.h | ||
| ToxicR/src/include/lognormalModels.h | ||
| ToxicR/src/include/lognormalTests.h | ||
| ToxicR/src/include/lognormal_EXP_NC.h | ||
| ToxicR/src/include/lognormal_HILL_NC.h | ||
| ToxicR/src/include/lognormal_POLYNOMIAL_NC.h | ||
| ToxicR/src/include/lognormal_POWER_NC.h | ||
| ToxicR/src/include/lognormal_likelihoods.h | ||
| ToxicR/src/include/mcmc_anal.h | ||
| ToxicR/src/include/mcmc_analysis.h | ||
| ToxicR/src/include/mcmc_struct.h | ||
| ToxicR/src/include/normalModels.h | ||
| ToxicR/src/include/normalTests.h | ||
| ToxicR/src/include/normal_EXP_NC.h | ||
| ToxicR/src/include/normal_FUNL_NC.h | ||
| ToxicR/src/include/normal_HILL_NC.h | ||
| ToxicR/src/include/normal_POLYNOMIAL_NC.h | ||
| ToxicR/src/include/normal_POWER_NC.h | ||
| ToxicR/src/include/normal_likelihoods.h | ||
| ToxicR/src/include/statisticalmodel.h | ||
| ToxicR/src/include/statmod.h | ||
| ToxicR/src/main_entry.cpp | ||
| ToxicR/src/main_entry_ma.cpp | ||
| ToxicR/src/main_entry_mcmc.cpp | ||
| ToxicR/src/main_polyk.cpp | ||
| ToxicR/src/polyK/polyK.cpp | ||
| ToxicR/src/polyK/polyK.h | ||
| ToxicR/src/polyK/polyK_animal.h | ||
| ToxicR/src/polyK/polyK_setup.cpp | ||
| ToxicR/src/polyK/polyK_setup.h | ||
| ToxicR/tests/testthat.R | ||
| ToxicR/tests/testthat/helper.R | ||
| ToxicR/tests/testthat/test-ma_continuous.R | ||
| ToxicR/tests/testthat/test-ma_dichotomous.R | ||
| ToxicR/tests/testthat/test-single_continuous_laplace.R | ||
| ToxicR/tests/testthat/test-single_continuous_mcmc.R | ||
| ToxicR/tests/testthat/test-single_continuous_mle.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_laplace.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_mcmc.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_mle.R | ||
| ToxicR/vignettes/.gitignore | ||
| ToxicR/vignettes/Continuous.Rmd | ||
| ToxicR/vignettes/Dichotomous.Rmd | ||
| ToxicR_22.01.tar.gz | ||
| ToxicR_22.01.zip | ||
| ToxicR_MAC_M1_20.01.tgz | ||
| ToxicR_MAC_x86_22.01.tgz |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,143 @@ | ||
| ToxicR/.RData | ||
| ToxicR/BMDS.Rproj | ||
| ToxicR/DESCRIPTION | ||
| ToxicR/NAMESPACE | ||
| ToxicR/R/.Rhistory | ||
| ToxicR/R/Build_Priors.R | ||
| ToxicR/R/MAdensity_plot.R | ||
| ToxicR/R/NTP.R | ||
| ToxicR/R/RcppExports.R | ||
| ToxicR/R/TOXICR_GLOBALS.R | ||
| ToxicR/R/cleveland_plot.R | ||
| ToxicR/R/cont_functions.R | ||
| ToxicR/R/continuous_clean.R | ||
| ToxicR/R/continuous_plots.R | ||
| ToxicR/R/continuous_pvalue.R | ||
| ToxicR/R/continuous_wrappers.R | ||
| ToxicR/R/dicho_functions.R | ||
| ToxicR/R/dichotomous_plots.R | ||
| ToxicR/R/dichotomous_wrappers.R | ||
| ToxicR/R/model_averaging_fits.R | ||
| ToxicR/R/model_averaging_lists.R | ||
| ToxicR/R/opening_messages.R | ||
| ToxicR/R/prior_classes.R | ||
| ToxicR/data/williamCrits.RData | ||
| ToxicR/man/MAdensity_plot.Rd | ||
| ToxicR/man/NTP.Rd | ||
| ToxicR/man/cleveland_plot.Rd | ||
| ToxicR/man/ma_continuous_fit.Rd | ||
| ToxicR/man/ma_dichotomous_fit.Rd | ||
| ToxicR/man/single_continuous_fit.Rd | ||
| ToxicR/man/single_dichotomous_fit.Rd | ||
| ToxicR/src/.Rhistory | ||
| ToxicR/src/Makevars | ||
| ToxicR/src/Makevars.win | ||
| ToxicR/src/RcppExports.cpp | ||
| ToxicR/src/code_base/.DS_Store | ||
| ToxicR/src/code_base/.Rhistory | ||
| ToxicR/src/code_base/DichGammaBMD_NC.cpp | ||
| ToxicR/src/code_base/DichLogProbitBMD_NC.cpp | ||
| ToxicR/src/code_base/DichLogisticBMD_NC.cpp | ||
| ToxicR/src/code_base/DichProbitBMD_NC.cpp | ||
| ToxicR/src/code_base/DichQlinearBMD_NC.cpp | ||
| ToxicR/src/code_base/DichWeibullBMD_NC.cpp | ||
| ToxicR/src/code_base/IDPrior.cpp | ||
| ToxicR/src/code_base/IDPriorMCMC.cpp | ||
| ToxicR/src/code_base/Makefile.am | ||
| ToxicR/src/code_base/analysis_of_deviance.cpp | ||
| ToxicR/src/code_base/analysis_of_deviance.h | ||
| ToxicR/src/code_base/bmdStruct.cpp | ||
| ToxicR/src/code_base/bmdStruct.h | ||
| ToxicR/src/code_base/continuous_clean_aux.cpp | ||
| ToxicR/src/code_base/continuous_clean_aux.h | ||
| ToxicR/src/code_base/continuous_entry_code.cpp | ||
| ToxicR/src/code_base/continuous_entry_code.h | ||
| ToxicR/src/code_base/continuous_model_functions.cpp | ||
| ToxicR/src/code_base/continuous_model_functions.h | ||
| ToxicR/src/code_base/dichotomous_entry_code.cpp | ||
| ToxicR/src/code_base/dichotomous_entry_code.h | ||
| ToxicR/src/code_base/gradient.cpp | ||
| ToxicR/src/code_base/gradient.h | ||
| ToxicR/src/code_base/helperfunctions.cpp | ||
| ToxicR/src/code_base/list_r_conversion.h | ||
| ToxicR/src/code_base/lognormalModels.cpp | ||
| ToxicR/src/code_base/lognormal_EXP_NC.cpp | ||
| ToxicR/src/code_base/lognormal_HILL_NC.cpp | ||
| ToxicR/src/code_base/lognormal_POLYNOMIAL_NC.cpp | ||
| ToxicR/src/code_base/lognormal_POWER_NC.cpp | ||
| ToxicR/src/code_base/normalModels.cpp | ||
| ToxicR/src/code_base/normal_EXP_NC.cpp | ||
| ToxicR/src/code_base/normal_FUNL_NC.cpp | ||
| ToxicR/src/code_base/normal_HILL_NC.cpp | ||
| ToxicR/src/code_base/normal_POLYNOMIAL_NC.cpp | ||
| ToxicR/src/code_base/normal_POWER_NC.cpp | ||
| ToxicR/src/code_base/normal_likelihoods.cpp | ||
| ToxicR/src/code_base/stdafx.cpp | ||
| ToxicR/src/code_base/stdafx.h | ||
| ToxicR/src/code_base/targetver.h | ||
| ToxicR/src/include/.Rhistory | ||
| ToxicR/src/include/DichGammaBMD_NC.h | ||
| ToxicR/src/include/DichHillBMD_NC.h | ||
| ToxicR/src/include/DichLogLogisticBMD_NC.h | ||
| ToxicR/src/include/DichLogProbitBMD_NC.h | ||
| ToxicR/src/include/DichLogisticBMD_NC.h | ||
| ToxicR/src/include/DichMultistageBMD_NC.h | ||
| ToxicR/src/include/DichProbitBMD_NC.h | ||
| ToxicR/src/include/DichQlinearBMD_NC.h | ||
| ToxicR/src/include/DichWeibullBMD_NC.h | ||
| ToxicR/src/include/IDPrior.h | ||
| ToxicR/src/include/IDPriorMCMC.h | ||
| ToxicR/src/include/binomModels.h | ||
| ToxicR/src/include/binomialTests.h | ||
| ToxicR/src/include/bmd_calculate.h | ||
| ToxicR/src/include/bmds_entry.h | ||
| ToxicR/src/include/cBMDstatmod.h | ||
| ToxicR/src/include/cmodeldefs.h | ||
| ToxicR/src/include/dBMDstatmod.h | ||
| ToxicR/src/include/log_likelihoods.h | ||
| ToxicR/src/include/lognormalModels.h | ||
| ToxicR/src/include/lognormalTests.h | ||
| ToxicR/src/include/lognormal_EXP_NC.h | ||
| ToxicR/src/include/lognormal_HILL_NC.h | ||
| ToxicR/src/include/lognormal_POLYNOMIAL_NC.h | ||
| ToxicR/src/include/lognormal_POWER_NC.h | ||
| ToxicR/src/include/lognormal_likelihoods.h | ||
| ToxicR/src/include/mcmc_anal.h | ||
| ToxicR/src/include/mcmc_analysis.h | ||
| ToxicR/src/include/mcmc_struct.h | ||
| ToxicR/src/include/normalModels.h | ||
| ToxicR/src/include/normalTests.h | ||
| ToxicR/src/include/normal_EXP_NC.h | ||
| ToxicR/src/include/normal_FUNL_NC.h | ||
| ToxicR/src/include/normal_HILL_NC.h | ||
| ToxicR/src/include/normal_POLYNOMIAL_NC.h | ||
| ToxicR/src/include/normal_POWER_NC.h | ||
| ToxicR/src/include/normal_likelihoods.h | ||
| ToxicR/src/include/statisticalmodel.h | ||
| ToxicR/src/include/statmod.h | ||
| ToxicR/src/main_entry.cpp | ||
| ToxicR/src/main_entry_ma.cpp | ||
| ToxicR/src/main_entry_mcmc.cpp | ||
| ToxicR/src/main_polyk.cpp | ||
| ToxicR/src/polyK/polyK.cpp | ||
| ToxicR/src/polyK/polyK.h | ||
| ToxicR/src/polyK/polyK_animal.h | ||
| ToxicR/src/polyK/polyK_setup.cpp | ||
| ToxicR/src/polyK/polyK_setup.h | ||
| ToxicR/tests/testthat.R | ||
| ToxicR/tests/testthat/helper.R | ||
| ToxicR/tests/testthat/test-ma_continuous.R | ||
| ToxicR/tests/testthat/test-ma_dichotomous.R | ||
| ToxicR/tests/testthat/test-single_continuous_laplace.R | ||
| ToxicR/tests/testthat/test-single_continuous_mcmc.R | ||
| ToxicR/tests/testthat/test-single_continuous_mle.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_laplace.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_mcmc.R | ||
| ToxicR/tests/testthat/test-single_dichotomous_mle.R | ||
| ToxicR/vignettes/.gitignore | ||
| ToxicR/vignettes/Continuous.Rmd | ||
| ToxicR/vignettes/Dichotomous.Rmd | ||
| ToxicR_22.01.tar.gz | ||
| ToxicR_22.01.zip | ||
| ToxicR_MAC_M1_20.01.tgz | ||
| ToxicR_MAC_x86_22.01.tgz |
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