reworking to remove scripts from this repo and move to NIGMS-Sandbox

.github/workflows/check-links.yaml

@@ -1,34 +1,13 @@
 name: 'Check Links'
 on:
-  workflow_call:
-    inputs:
-      directory:
-        required: false
-        type: string
-      repo_link_ignore_list:
-        required: true
-        type: string
-    secrets:
-      PAT:
-        required: false
   push:
   pull_request:
+  workflow_dispatch:
+
 
 jobs:
   link_check:
     name: 'Link Check'
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Link Check
-        run: |
-          echo ${{jobs.link_check.uses}}
-
-      - name: Link Check
-        run: |
-          python3 ${{github.action_path}}/check_links.py
-        env:
-          LINK_IGNORE_LIST: https://www.sciencedirect.com,https://portlandpress.com
-          PAT: ${{ secrets.PAT }}
+    uses: NIGMS/NIGMS-Sandbox/.github/workflows/check-links.yaml@main
+    with:
+      repo_link_ignore_list: ""

.github/workflows/notebook-lint.yaml

@@ -1,43 +1,14 @@
 name: 'Lint Notebook'
 on:
-  workflow_call:
-    inputs:
-      directory:
-        required: false
-        type: string
   push:
+  workflow_dispatch:
 permissions:
   contents: write
   id-token: write
 
 jobs:
   lint:
     name: 'Linting'
-    runs-on: ubuntu-latest
-
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v4
-
-      - name: Set up Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.12'
-          cache: 'pip'
-
-      - name: Install requirements.txt
-        run: |
-          python3 -m pip install --upgrade pip
-          pip3 install nbformat
-
-      - name: Notebook Linting
-        working-directory: .github/workflows
-        run: |
-          python3 lint.py
-
-      - name: Commit changes
-        uses: EndBug/add-and-commit@v9
-        with:
-          author_name: github-action
-          author_email: [email protected]
-          message: 'Github Action: Refresh stats'
+    uses: NIGMS/NIGMS-Sandbox/.github/workflows/notebook-lint.yaml@main
+    with:
+      directory: .