Change compiling flag for hydrostatic options

.gitmodules

@@ -1,7 +1,7 @@
 [submodule "atmos_cubed_sphere"]
   path = atmos_cubed_sphere
-  url = https://github.com/NOAA-GFDL/GFDL_atmos_cubed_sphere
-  branch = dev/emc
+  url = https://github.com/XiaqiongZhou-NOAA/GFDL_atmos_cubed_sphere
+  branch = hydro
 [submodule "ccpp/framework"]
   path = ccpp/framework
   url = https://github.com/NCAR/ccpp-framework

CMakeLists.txt

@@ -37,6 +37,9 @@ set(USE_GFSL63  ON)
 if(MOVING_NEST)
   set(MOVING_NEST ON)
 endif()
+if(HYDRO)
+  set(HYDRO ON)
+endif()
 add_subdirectory(atmos_cubed_sphere)
 target_compile_definitions(fv3 PRIVATE BYPASS_BREED_SLP_INLINE)
 
@@ -61,7 +64,11 @@ if(NOT PARALLEL_NETCDF)
 endif()
 
 if(MOVING_NEST)
-  list(APPEND _fv3atm_defs_private MOVING_NEST MOIST_CAPPA USE_COND)
+  list(APPEND _fv3atm_defs_private MOVING_NEST)
+  if(NOT HYDRO)
+    list(APPEND _fv3atm_defs_private MOIST_CAPPA USE_COND)
+  endif()
+
   if(DEBUG)
     list(APPEND _fv3atm_defs_private DEBUG)
   endif()

ccpp/CMakeLists.txt

@@ -84,8 +84,10 @@ endif(CCPP_32BIT)
 
 #------------------------------------------------------------------------------
 # Add model-specific flags for C/C++/Fortran preprocessor
-add_definitions(-DMOIST_CAPPA -DUSE_COND -DNEMS_GSM)
-add_definitions(-DINTERNAL_FILE_NML)
+if(NOT HYDRO)
+  add_definitions(-DMOIST_CAPPA -DUSE_COND -DNEMS_GSM)
+endif()
+add_definitions(-DINTERNAL_FILE_NML -DNEMS_GSM)
 
 if(MULTI_GASES)
   add_definitions(-DMULTI_GASES)

io/post_fv3.F90

@@ -3564,6 +3564,19 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
               enddo
             endif
 
+            ! model level omga
+            if(trim(fieldname)=='omga') then
+              !$omp parallel do default(none) private(i,j,l) shared(lm,jsta,jend,ista,iend,omga,arrayr43d,fillvalue,spval)
+              do l=1,lm
+                do j=jsta,jend
+                  do i=ista, iend
+                    omga(i,j,l) = arrayr43d(i,j,l)
+                    if(abs(arrayr43d(i,j,l)-fillvalue)<small) omga(i,j,l) = spval
+                  enddo
+                enddo
+              enddo
+            endif
+
             ! soilt
             if(trim(fieldname)=='soilt') then
               !$omp parallel do default(none) private(i,j,l) shared(nsoil,jsta,jend,ista,iend,stc,arrayr43d,sm,sice,fillvalue,spval)
@@ -4268,22 +4281,6 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
         enddo
       enddo
 
-      do l=lm,1,-1
-!$omp parallel do default(none) private(i,j) shared(l,jsta,jend,omga,wh,dpres,zint,spval,ista,iend)
-        do j=jsta,jend
-          do i=ista,iend
-            if(wh(i,j,l) /= spval) then
-              omga(i,j,l) = (-1.) * wh(i,j,l) * dpres(i,j,l)/zint(i,j,l)
-              zint(i,j,l) = zint(i,j,l) + zint(i,j,l+1)
-            else
-              omga(i,j,l) = spval
-              zint(i,j,l) = spval
-            endif
-          enddo
-        enddo
-      enddo
-!      print *,'in post_lam,omga 3d=',maxval(omga(ista:iend,jsta:jend,1)),minval(omga(ista:iend,jsta:jend,1)), &
-!           'lm=',maxval(omga(ista:iend,jsta:jend,lm)),minval(omga(ista:iend,jsta:jend,lm))
 
 ! compute pint from top down
 !$omp parallel do default(none) private(i,j) shared(jsta,jend,ak5,pint,ista,iend)
@@ -4343,6 +4340,28 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
         end do
       end do
 
+      do l=lm,1,-1
+!$omp parallel do default(none) private(i,j) shared(l,jsta,jend,omga,wh,dpres,zint,alpint,q,t,spval,ista,iend)
+        do j=jsta,jend
+          do i=ista,iend
+            if(wh(i,j,l) /= spval) then
+              if (omga(i,j,l) == spval .and. dpres(i,j,l) /= spval .and. zint(i,j,l) /=spval)  &
+                  omga(i,j,l) = (-1.) * wh(i,j,l) * dpres(i,j,l)/zint(i,j,l)
+              zint(i,j,l) = zint(i,j,l) + zint(i,j,l+1)
+            else
+              if(zint(i,j,l+1) /=spval .and. t(i,j,l) /= spval .and.  alpint(i,j,l+1) /= spval  &
+                             .and. alpint(i,j,l) /=spval .and. q(i,j,l) /= spval) then
+                 zint(i,j,l) = zint(i,j,l+1)+(rgas/grav)*t(i,j,l)*(1.+fv*q(i,j,l))*(alpint(i,j,l+1)-alpint(i,j,l))
+               else 
+                 zint(i,j,l) = spval
+              endif
+            endif
+          enddo
+        enddo
+      enddo
+!      print *,'in post_lam,omga 3d=',maxval(omga(ista:iend,jsta:jend,1)),minval(omga(ista:iend,jsta:jend,1)), &
+!           'lm=',maxval(omga(ista:iend,jsta:jend,lm)),minval(omga(ista:iend,jsta:jend,lm))
+
 ! compute zmid
       do l=lm,1,-1
 !$omp parallel do default(none) private(i,j) shared(l,jsta,jend,zmid,zint,pmid,alpint,spval,ista,iend)
@@ -4359,6 +4378,7 @@ subroutine set_postvars_fv3(wrt_int_state,grid_id,mype,mpicomp)
         end do
       end do
 
+
 ! surface potential T, and potential T at roughness length
 !$omp parallel do default(none) private(i,j) shared(jsta,jend,ista,iend,spval,lp1,sm,ths,sst,thz0,sice,pint)
       do j=jsta,jend