Python code to automate running the Trackmate plugin from ImageJ
ImageJ: https://imagej.net/scripting/
Fake data: imp = IJ.openImage("https://fiji.sc/samples/FakeTracks.tif")
Data: https://drive.google.com/drive/folders/13psfbnEtXQ96O9ePtNq_B8TtiZ4kqAm0?usp=drive_link
Apptainer: https://apptainer.org/