Code

Merge dev branch#300

Code

Merged

jdtsmith merged 74 commits intomasterPAHFIT/pahfit:masterfrom devPAHFIT/pahfit:devCopy head branch name to clipboardNov 1, 2024

+1,587-1,381

Commits

Commits on Apr 18, 2024

• Use importlib.resources instead of pkg_resources (from setuptools)

  

  Dries Van De Putte

  committed
  8bc62a0

  Copy full SHA for 8bc62a0

Commits on May 9, 2024

• Simplify feature bounds using np.nan instead of masking

  Show description for d53422f
  jdtsmith

  committed
  d53422f

  Copy full SHA for d53422f

• Add missing colon

  jdtsmith

  committed
  3017dda

  Copy full SHA for 3017dda

• Remove BoundedMaskedColumn

  Show description for ec97932
  jdtsmith

  committed
  ec97932

  Copy full SHA for ec97932

• Fix bounded_is_missing arg usage

  jdtsmith

  committed
  afc0bc9

  Copy full SHA for afc0bc9

• features: doc improvements

  jdtsmith

  committed
  ef094af

  Copy full SHA for ef094af

• Merge pull request #278 from drvdputt/use_importlib

  Show description for 4740c34
  jdtsmith

  authored
  4740c34

  Copy full SHA for 4740c34

• Fix dtype var mention

  jdtsmith

  committed
  4fefb0a

  Copy full SHA for 4fefb0a

• _construct_table: fix dtypes formulation

  jdtsmith

  committed
  3c9fb7a

  Copy full SHA for 3c9fb7a

• Make linter happier

  jdtsmith

  committed
  2729f89

  Copy full SHA for 2729f89

• _construct_table: hard-code str for column types for no-bounds cols

  jdtsmith

  committed
  ce49a70

  Copy full SHA for ce49a70

• Fix dtype and format for structured array Features cells

  jdtsmith

  committed
  1cd8404

  Copy full SHA for 1cd8404

• Suppress mention of [val, min, max] in column headers

  jdtsmith

  committed
  cf180ee

  Copy full SHA for cf180ee

• Features: Strip dtype from default __repr__

  jdtsmith

  committed
  be7cca1

  Copy full SHA for be7cca1

• Allow meta['pahfit_format'] on table and columns

  jdtsmith

  committed
  19e9c25

  Copy full SHA for 19e9c25

• Mask unused value for linter

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  646ffd1

  Copy full SHA for 646ffd1

• Expose KIND_PARAMS and PARAM_UNITS as module level constants

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  6bd5e1d

  Copy full SHA for 6bd5e1d

• UNITS: remove fwhm, add solid_angle

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  3d0aae5

  Copy full SHA for 3d0aae5

• Bug: Enum members need .value to extract the unit value

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  a274097

  Copy full SHA for a274097

• units: switch to simple module constants

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  548ded1

  Copy full SHA for 548ded1

• Remove 'tied' param/group type (for another PR)

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  8d637c4

  Copy full SHA for 8d637c4

• _index_table: re-add

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  1157f89

  Copy full SHA for 1157f89

• linter happiness

  

  jdtsmith

  authored and

  Dries Van De Putte

  committed
  b4a5ba4

  Copy full SHA for b4a5ba4

• Set power unit to intensity_power amplitude for now

  

  Dries Van De Putte

  committed
  21c61f0

  Copy full SHA for 21c61f0

• Convert input spectrum to internal units, error if not ~ MJy sr-1

  

  Dries Van De Putte

  committed
  e7e5c70

  Copy full SHA for e7e5c70

• State that MJy / sr unit restriction is temporary

  

  Dries Van De Putte

  committed
  1a3360b

  Copy full SHA for 1a3360b

• Convert example spectra to MJy / sr (temporary fix)

  

  Dries Van De Putte

  committed
  4573a35

  Copy full SHA for 4573a35

Commits on May 10, 2024

• Merge pull request #284 from drvdputt/units-standard

  Show description for 6ec9596
  jdtsmith

  authored
  6ec9596

  Copy full SHA for 6ec9596

• Replace Model.plot() implementation by method that uses tabulate()

  

  Dries Van De Putte

  committed
  5ce6067

  Copy full SHA for 5ce6067

• scalefac_resid argument for plot() and use it in plot_pahfit script

  

  Dries Van De Putte

  committed
  1bbe11f

  Copy full SHA for 1bbe11f

• Remove old plot from PAHFITBase

  

  Dries Van De Putte

  committed
  99dda28

  Copy full SHA for 99dda28

Commits on May 13, 2024

• Fix accidentally removed pahfit.units import

  

  Dries Van De Putte

  committed
  6a85e38

  Copy full SHA for 6a85e38

• Tweaks to Model.plot() based on pull request #281 review

  

  Dries Van De Putte

  committed
  50f232c

  Copy full SHA for 50f232c

• Merge pull request #281 from drvdputt/plot_rewrite

  Show description for 68ce437
  jdtsmith

  authored
  68ce437

  Copy full SHA for 68ce437

• Merge branch 'simpler-bounded-params' into dev

  jdtsmith

  committed
  58038bc

  Copy full SHA for 58038bc

Commits on May 14, 2024

• Add Fitter API and APFitter implementation

  

  Dries Van De Putte

  committed
  c3abd93

  Copy full SHA for c3abd93

• Delete base.py and use Fitter API in Model class implementation

  

  Dries Van De Putte

  committed
  a73dcb4

  Copy full SHA for a73dcb4

• Regular floats for Features _bounds_dtype to exactly match test

  

  Dries Van De Putte

  committed
  87a6e18

  Copy full SHA for 87a6e18

• Fixes based on test cases

  

  Dries Van De Putte

  committed
  a5e370d

  Copy full SHA for a5e370d

• Remove obsolete helpers.calculate_compounds, more formatting

  

  Dries Van De Putte

  committed
  9ded572

  Copy full SHA for 9ded572

• Remove mentions of PAHFITBase

  

  Dries Van De Putte

  committed
  c1a2665

  Copy full SHA for c1a2665

• Clarify Fitter API operation description

  

  Dries Van De Putte

  committed
  96757a6

  Copy full SHA for 96757a6

Commits on May 17, 2024

• Array vs scalar arguments to determine fitted/fixed in Fitter

  Show description for a9311cc
  

  Dries Van De Putte

  committed
  a9311cc

  Copy full SHA for a9311cc

• Remove clear() from Fitter and APFitter

  

  Dries Van De Putte

  committed
  02cd40b

  Copy full SHA for 02cd40b

• Rename register_* to add_feature_*, clean up APFitter var names

  Show description for 45d1497
  

  Dries Van De Putte

  committed
  45d1497

  Copy full SHA for 45d1497

Commits on May 20, 2024

• Model and geometry keywords for add_feature_attenuation/absorption

  

  Dries Van De Putte

  committed
  add53ab

  Copy full SHA for add53ab

• Replace xz, yz by lam, flux

  

  Dries Van De Putte

  committed
  7aed851

  Copy full SHA for 7aed851

• Docstring and formatting fixes

  

  Dries Van De Putte

  committed
  edcbbf6

  Copy full SHA for edcbbf6

Commits on May 21, 2024

• Add TODO in guess to replace fwhm guessing by sigma_v

  

  Dries Van De Putte

  committed
  4057012

  Copy full SHA for 4057012

• Work with self.fitter directly instead fitter argument/return

  

  Dries Van De Putte

  committed
  8f4d2bc

  Copy full SHA for 8f4d2bc

• Remove Fitter.components(), instead keep 'enabled' list in Model

  

  Dries Van De Putte

  committed
  ac2146f

  Copy full SHA for ac2146f

Commits on Jun 25, 2024

• Don't copy when applying feature mask in tabulate

  

  Dries Van De Putte

  committed
  2942c08

  Copy full SHA for 2942c08

• Better documentation and variable names for _set_up_fitter

  

  Dries Van De Putte

  committed
  30b0c2e

  Copy full SHA for 30b0c2e

• Replace wavelengths named w by lam

  

  Dries Van De Putte

  committed
  e241077

  Copy full SHA for e241077

• Fix instrument and redshift being swapped in Features metadata

  

  Dries Van De Putte

  committed
  040798d

  Copy full SHA for 040798d

• Fix style issue

  

  Dries Van De Putte

  committed
  032ed4b

  Copy full SHA for 032ed4b

• Put fitter modules in pahfit.fitters. Rename apfitter to ap_fitter.

  

  Dries Van De Putte

  committed
  f53c8db

  Copy full SHA for f53c8db

Commits on Jul 3, 2024

• Fix astropy contribution guide link

  drvdputt

  committed
  a990b47

  Copy full SHA for a990b47

• Replace links to PAHFIT classic

  drvdputt

  committed
  2dc3c80

  Copy full SHA for 2dc3c80

• Rephrase comment explaining redshift adjustment of fwhm

  drvdputt

  committed
  5d22489

  Copy full SHA for 5d22489

Commits on Jul 9, 2024

• Replace more cases of "wav" by "lam", fix redshift bug in plot

  drvdputt

  committed
  da9ed24

  Copy full SHA for da9ed24

• Use "is np.ma.masked" when interpreting fwhm column

  drvdputt

  committed
  4e16008

  Copy full SHA for 4e16008

• Merge pull request #289 from drvdputt/dev-fitterapi

  Show description for 50c19b7
  jdtsmith

  authored
  50c19b7

  Copy full SHA for 50c19b7

• Add PowerDrude1D and PowerGaussian1D classes

  

  Dries Van De Putte

  authored and

  drvdputt

  committed
  f80c460

  Copy full SHA for f80c460

• Switch from amplitude to power units and adjust guess accordingly

  

  Dries Van De Putte

  authored and

  drvdputt

  committed
  76d1d20

  Copy full SHA for 76d1d20

• Remove equation with nu0 from PowerDrude docstring

  

  Dries Van De Putte

  authored and

  drvdputt

  committed
  ddec47b

  Copy full SHA for ddec47b

• Set power unit in Features table to intensity_power

  drvdputt

  committed
  aa15514

  Copy full SHA for aa15514

• Change trapz to trapezoid to fix deprecation warning

  drvdputt

  committed
  79cac6f

  Copy full SHA for 79cac6f

• Formatting

  drvdputt

  committed
  8310da1

  Copy full SHA for 8310da1

Commits on Aug 13, 2024

• Fix typo in PowerDrude1D docstring

  drvdputt

  committed
  c500ae8

  Copy full SHA for c500ae8

• Use scipy.integrate.trapezoid instead of np.trapezoid

  drvdputt

  committed
  4c22207

  Copy full SHA for 4c22207

• Access intensity_amplitude_factor via self in power features

  drvdputt

  committed
  936a2fa

  Copy full SHA for 936a2fa

• Clean up some more docstrings in ap_components

  drvdputt

  committed
  a643417

  Copy full SHA for a643417

Commits on Aug 30, 2024

• Merge pull request #295 from drvdputt/dev-powerfeatures

  Show description for 6f6ead0
  jdtsmith

  authored
  6f6ead0

  Copy full SHA for 6f6ead0