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adding physiological traits #103

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adding physiological traits #103

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175 changes: 175 additions & 0 deletions sweetpotato_trait.obo
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Expand Up @@ -7916,6 +7916,175 @@ def: "Compute the total dry weight of storage roots per net plot using the formu
is_a: CO_331:1000013 ! Computation
relationship: method_of CO_331:0001080 ! total storage root dry weight

[Term]
id: CO_331:0001100
name: Leaf area index computation
namespace: SweetpotatoTrait
def: "Defined as total surface area of foliage per unit ground area" []
synonym: "LAI" EXACT []
synonym: "LfAInd_Cp" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0001105 ! leaf area index
relationship: variable_of CO_331:0001110 ! leaflet area index - computation method
relationship: variable_of CO_331:0001115 ! unitless

[Term]
id: CO_331:0001101
name: Leaf Stomatal conductance measurement in mmol
namespace: SweetpotatoTrait
def: "Stomatal conductance is the rate of passage of CO2 entering or water vapor exiting through the stomata of a leaf" []
synonym: "LfSt_Ms_mmol" EXACT []
synonym: "LSC" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0001106 ! stomatal conductance
relationship: variable_of CO_331:0001111 ! stomatal conductance-leaf porometer method
relationship: variable_of CO_331:0001116 ! mmol

[Term]
id: CO_331:0001102
name: Leaf Stomatal density counting mm2
namespace: SweetpotatoTrait
def: "The number of stomata per leaf area." []
synonym: "LfStDn_Ct_mm2" EXACT []
synonym: "LSD" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0001107 ! stomatal density
relationship: variable_of CO_331:0001112 ! stomatal density- counting microscopy method
relationship: variable_of CO_331:0001117 ! mm2

[Term]
id: CO_331:0001103
name: Canopy temperature measurement in ℃
namespace: SweetpotatoTrait
def: "The temperature of the canopy by plot with a thermal image" []
synonym: "CT" EXACT []
synonym: "CT_Ms_℃" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0001108 ! canopy temperature
relationship: variable_of CO_331:0001113 ! canopy temperature with thermography method
relationship: variable_of CO_331:0001118 ! ℃

[Term]
id: CO_331:0001104
name: Canopy temperature depression computation ℃
namespace: SweetpotatoTrait
def: "Deviation of temperature of plant canopies from the ambient temperature" []
synonym: "CTD" EXACT []
synonym: "CTD_cp_℃" EXACT []
is_a: CO_331:1000003 ! Variables
relationship: variable_of CO_331:0001109 ! canopy temperature depression
relationship: variable_of CO_331:0001114 ! canopy temperature depression method
relationship: variable_of CO_331:0001118 ! ℃

[Term]
id: CO_331:0001105
name: leaf area index
namespace: SweetpotatoTrait
def: "Defined as total surface area of foliage per unit ground area" []
synonym: "LfAInd" EXACT []
is_a: CO_331:1000031

[Term]
id: CO_331:0001106
name: stomatal conductance
namespace: SweetpotatoTrait
def: "Stomatal conductance is the rate of passage of CO2 entering or water vapor exiting through the stomata of a leaf" []
synonym: "LfSt" EXACT []
is_a: CO_331:1000031

[Term]
id: CO_331:0001107
name: stomatal density
namespace: SweetpotatoTrait
def: "The number of stomata per leaf area." []
synonym: "LfStDn" EXACT []
is_a: CO_331:1000031

[Term]
id: CO_331:0001108
name: canopy temperature
namespace: SweetpotatoTrait
def: "The temperature of the canopy by plot with a thermal image taken for a infrared thermografic camera" []
synonym: "CT" EXACT []
is_a: CO_331:1000031

[Term]
id: CO_331:0001109
name: canopy temperature depression
namespace: SweetpotatoTrait
def: "Deviation of temperature of plant canopies from the ambient temperature" []
synonym: "CTD" EXACT []
is_a: CO_331:1000031

[Term]
id: CO_331:0001110
name: leaflet area index - computation method
namespace: SweetpotatoMethod
def: "Estimated by a Plant Canopy Analyzer calculated as LAI (Leaf area index)" []
is_a: CO_331:1000013 ! Computation
relationship: method_of CO_331:0001105 ! leaf area index

[Term]
id: CO_331:0001111
name: stomatal conductance-leaf porometer method
namespace: SweetpotatoMethod
def: "A leaf porometer is used to estimate stomatal conductance by simply clipping the sensor head onto a leaf and record stomatal conductance within 30 seconds" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0001106 ! stomatal conductance

[Term]
id: CO_331:0001112
name: stomatal density- counting microscopy method
namespace: SweetpotatoMethod
def: "Counting number of stome in the underside (abaxial) and top side (adaxial) of the leaf with a microscopie" []
is_a: CO_331:1000012 ! Counting
relationship: method_of CO_331:0001107 ! stomatal density

[Term]
id: CO_331:0001113
name: canopy temperature with thermography method
namespace: SweetpotatoMethod
def: "Measure the canopy temperature and record it. Use a computer program to measure the mean temperature of the canopy by plot with a thermal image taken using an Unnamed Air Vehicle (UAV)" []
is_a: CO_331:1000011 ! Measurement
relationship: method_of CO_331:0001108 ! canopy temperature

[Term]
id: CO_331:0001114
name: canopy temperature depression method
namespace: SweetpotatoMethod
def: "Compute canopy temperature depression using the formula" []
is_a: CO_331:1000013 ! Computation
relationship: method_of CO_331:0001109 ! canopy temperature depression

[Term]
id: CO_331:0001115
name: unitless
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0001110 ! leaflet area index - computation method

[Term]
id: CO_331:0001116
name: mmol
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0001111 ! stomatal conductance-leaf porometer method

[Term]
id: CO_331:0001117
name: mm2
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0001112 ! stomatal density- counting microscopy method

[Term]
id: CO_331:0001118
name: ℃
namespace: SweetpotatoScale
is_a: CO_331:1000019 ! Numerical
relationship: scale_of CO_331:0001113 ! canopy temperature with thermography method
relationship: scale_of CO_331:0001114 ! canopy temperature depression method

[Term]
id: CO_331:0002000
name: computation - total storage roots yield adjusted method
Expand Down Expand Up @@ -9254,6 +9423,12 @@ name: Nominal
namespace: SweetpotatoScale
is_a: CO_331:1000002 ! Scales

[Term]
id: CO_331:1000031
name: Physiological_trait
namespace: SweetpotatoTrait
is_a: CO_331:0000000 ! CGIAR sweetpotato trait ontology

[Term]
id: CO_331:20000
name: Men Farmers preference of cooked leaf texture test
Expand Down