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@3ach 3ach released this 23 Apr 00:34
· 1310 commits to master since this release
f07baf5

SynBioHub is a design repository for people designing biological constructs. It enables DNA and protein designs to be uploaded and shared. SynBioHub also facilitates searching for information about existing useful parts and designs by combining data from a variety of sources. Finally, it has a programmatic interface that allows applications to connect to SynBioHub via a RESTful API to enable third-party software to search, fetch, and submit parts and other design information.

The easiest install method is using Docker, instructions here:

http://wiki.synbiohub.org/wiki/Installation

It is also possible to run on Mac and Linux systems without using Docker. Instructions can be found on the repository README here:

https://github.com/SynBioHub/synbiohub

If you have an instance of SynBioHub running on your machine and would like to make it publicly accessible using the web, we recommend using nginx. Instructions for deploying on nginx can be found here:

http://wiki.synbiohub.org/wiki/NGINX_configuration_instructions

Finally, if you do create a publically accessible instance of SynBioHub, we would like to hear from you, so we may add it to our web-of-registries. Please email:

[email protected]

New Features

  • Support for all new features of SBOL 2.3
  • Added a full SPARQL interface for administrators
  • New rotating log files

Changes

  • Search results now indicate the type of an object
  • Updated to use libSBOLj 2.4.0 and sboljs 2.2

Bug fixes

  • Fixed bug with proper handling of plugins that are down
  • Fixed an issue that was causing too many open files errors
  • Fixed a bug in the git revision footer message
  • Fixed some issues in GenBank conversion
    • Fixed a bug in ICE collection view