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Merge branch 'dev-define-engines-abc' into dev-convert-modelabc-to-to…
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…rch-nn-model

# Conflicts:
#	tests/models/test_arch_vanilla.py
#	tiatoolbox/models/architecture/vanilla.py
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shaneahmed committed Nov 20, 2024
2 parents cc6c1c5 + dba269c commit 0ade741
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Showing 22 changed files with 4,886 additions and 4,242 deletions.
4 changes: 2 additions & 2 deletions .github/workflows/python-package.yml
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Expand Up @@ -30,7 +30,7 @@ jobs:
sudo apt update
sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
python -m pip install --upgrade pip
python -m pip install ruff==0.7.0 pytest pytest-cov pytest-runner
python -m pip install ruff==0.7.4 pytest pytest-cov pytest-runner
pip install -r requirements/requirements.txt
- name: Cache tiatoolbox static assets
uses: actions/cache@v3
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- name: Test with pytest
run: |
pytest --basetemp={envtmpdir} \
--cov=tiatoolbox --cov-report=term --cov-report=xml \
--cov=tiatoolbox --cov-report=term --cov-report=xml --cov-config=pyproject.toml \
--capture=sys \
--durations=10 --durations-min=1.0 \
--maxfail=1
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Expand Up @@ -60,7 +60,7 @@ repos:
- id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
- repo: https://github.com/astral-sh/ruff-pre-commit
# Ruff version.
rev: v0.7.0
rev: v0.7.4
hooks:
- id: ruff
args: [--fix, --exit-non-zero-on-fix]
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86 changes: 57 additions & 29 deletions examples/03-tissue-masking.ipynb

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