Merge branch 'develop' of https://github.com/TissueImageAnalytics/tia…

…toolbox into multichannel-reading
TissueImageAnalytics · Aug 7, 2024 · ba26d1d · ba26d1d
2 parents e9222ea + 964c846
commit ba26d1d
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diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
@@ -30,7 +30,7 @@ jobs:
         sudo apt update
         sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
         python -m pip install --upgrade pip
-        python -m pip install ruff==0.4.9 pytest pytest-cov pytest-runner
+        python -m pip install ruff==0.5.2 pytest pytest-cov pytest-runner
         pip install -r requirements/requirements.txt
     - name: Cache tiatoolbox static assets
       uses: actions/cache@v3

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -60,7 +60,7 @@ repos:
       - id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: v0.4.9
+    rev: v0.5.2
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]

diff --git a/benchmarks/annotation_store.ipynb b/benchmarks/annotation_store.ipynb
diff --git a/benchmarks/annotation_store_alloc.py b/benchmarks/annotation_store_alloc.py
@@ -306,8 +306,8 @@ def main(
             # Skip memray if not installed
             return
         regex = re.compile(r"Total memory allocated:\s*([\d.]+)MB")
-        pipe = subprocess.Popen(
-            [  # noqa: S603
+        pipe = subprocess.Popen(  # noqa: S603
+            [
                 sys.executable,
                 "-m",
                 "memray",