Code

Starting PrEP usage#204

Code

Merged

mmcleod89 merged 22 commits intodevelopmentUCL/hivpy:developmentfrom prep-usageUCL/hivpy:prep-usageCopy head branch name to clipboardOct 17, 2024

+422-31

Commits

Commits on Sep 23, 2024

• Moving PrEP usage code from PR #199.

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• Added basic PrEP usage unit test.

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Commits on Sep 25, 2024

• Updated FIXMEs after discussion + minor starting PrEP refactor.

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• Updated start date in PrEP usage test.

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Commits on Sep 26, 2024

• Added separate first start date columns for each PrEP type.

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Commits on Sep 27, 2024

• Added WIP for starting PrEP without explicit testing.

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Commits on Oct 1, 2024

• Added remaining column assignments to starting PrEP for the first time.

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• Updated starting PrEP unit test to include people not specifically tested to start PrEP.

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Commits on Oct 2, 2024

• Updated pregnancy unit tests for higher pregnancy probabilities and faster runtime.

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Commits on Oct 3, 2024

• Merge remote-tracking branch 'origin/development' into prep-usage

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• Switched all PrEP rankings to separate columns for congruency.

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Commits on Oct 7, 2024

• Refactored starting PrEP without explicit testing.

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• Increased some pregnancy test populations.

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Commits on Oct 8, 2024

• Moved a few data variables to yaml file.

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• Moved starting PrEP into its own function.

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• Added unit test for HIV false negative pop.

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Commits on Oct 9, 2024

• Divided probability to start PrEP by PrEP types.

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• Added test for different PrEP type start probabilities.

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Commits on Oct 14, 2024

• Fixed HIV false negatives by including diagnosis status.

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• Updated PrEP willingness test with more precise assertions.

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Commits on Oct 15, 2024

• Added HIV diagnosis and PrEP usage to evolve.

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• Changed starting PrEP to assume diagnosis has already occurred.

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