Add data

.gitattributes

@@ -0,0 +1,2 @@
+*.nc4 filter=lfs diff=lfs merge=lfs -text
+*.json filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -1,6 +1,3 @@
 /.quarto/
 _site/
-*.json
-*.zip
-*.nc4
 *.DS_STORE

sections/use-case-1/epa-ch4emission-grid-v2express_User_Notebook.ipynb

@@ -111,7 +111,7 @@
     "# User can pass any json or shape file here\n",
     "# The \"geopandas\" library makes working with geospatial data easier by facilitating spatial operations on geometric types  \n",
     "\n",
-    "permian_basin = geopandas.read_file('../data/use-case-3/permian.zip')"
+    "permian_basin = geopandas.read_file('../use-case-3/data/permian.zip')"
    ]
   },
   {

sections/use-case-2/lpjwsl-wetlandch4-grid-v1_User_Notebook.ipynb

@@ -317,11 +317,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "merra_t2m_dir='../data/use-case-2/merra_t2m_dir/'\n",
-    "merra_soil_moisture_dir = '../data/use-case-2/merra_soil_moisture_dir/'\n",
-    "merra_precip_rate_dir = '../data/use-case-2/merra_precip_rate_dir/'\n",
-    "merra_t2m_clim_dir = '../data/use-case-2/merra_t2m_clim_dir/'\n",
-    "savedir = '../data/use-case-2/saved_files'\n",
+    "merra_t2m_dir='data/merra_t2m_dir/'\n",
+    "merra_soil_moisture_dir = 'data/merra_soil_moisture_dir/'\n",
+    "merra_precip_rate_dir = 'data/merra_precip_rate_dir/'\n",
+    "merra_t2m_clim_dir = 'data/merra_t2m_clim_dir/'\n",
+    "savedir = 'data/saved_files'\n",
     "\n",
     "merra_precip_rate_clim_dir = merra_t2m_clim_dir \n",
     "merra_soil_moisture_clim_dir = merra_t2m_clim_dir"
@@ -616,7 +616,7 @@
     "\n",
     "\n",
     "# Insert the path to the NetCDF file\n",
-    "file_path = '../data/use-case-2/merra_t2m_dir/1991/MERRA2_100.instM_2d_asm_Nx.199101.nc4'  # Replace with the path to your NetCDF file\n",
+    "file_path = 'data/merra_t2m_dir/1991/MERRA2_100.instM_2d_asm_Nx.199101.nc4'  # Replace with the path to your NetCDF file\n",
     "dataset = nc.Dataset(file_path)\n",
     "\n",
     "\n",
@@ -960,7 +960,7 @@
     "    ax.set_xlim(-1,12)\n",
     "    ax.set_ylim(min(ts['box_totals']),max(ts['box_totals']))     #   manual per parameter\n",
     "    plt.show()\n",
-    "    plt.savefig('../data/use-case-2/saved_files/'+savename.split('/')[-1],dpi=300,bbox_inches='tight')"
+    "    plt.savefig('data/saved_files/'+savename.split('/')[-1],dpi=300,bbox_inches='tight')"
    ]
   }
  ],

sections/use-case-3/emit-ch4plume-v1_User_Notebook.ipynb

@@ -118,7 +118,7 @@
     "# Loading Permian Basin shape file as a region of interest\n",
     "# User can pass any json or shape file here\n",
     "# The \"geopandas\" library makes working with geospatial data easier by facilitating spatial operations on geometric types  \n",
-    "permian_basin = geopandas.read_file('../data/use-case-3/permian.zip')\n",
+    "permian_basin = geopandas.read_file('data/permian.zip')\n",
     "permian_basin = permian_basin.set_crs(4326,allow_override=True)"
    ]
   },
@@ -129,18 +129,18 @@
    "outputs": [],
    "source": [
     "# The ISS spatial coverage data is called on here\n",
-    "coverage = geopandas.read_file('../data/use-case-3/coverage.json')\n",
+    "coverage = geopandas.read_file('data/coverage.json')\n",
     "coverage = coverage.set_crs(4326,allow_override=True)\n",
     "\n",
     "# The ISS Date Time is converted to strings\n",
     "coverage['new_start_time'] = coverage.start_time.astype('str')\n",
     "\n",
     "# locations of where plumes are detected for the August 1, 2022 - present time period\n",
-    "metadata_json = geopandas.read_file('../data/use-case-3/methane_metadata.json')\n",
+    "metadata_json = geopandas.read_file('data/methane_metadata.json')\n",
     "metadata_json = metadata_json.set_crs(4326,allow_override=True)\n",
     "metadata_json['new_start_time'] = metadata_json['UTC Time Observed'].astype('str')\n",
     "metadata_json['Scene FIDs'] = list(map(lambda x : x[0] ,metadata_json['Scene FIDs']))\n",
-    "target_mask = geopandas.read_file('../data/use-case-3/target_mask.json')\n",
+    "target_mask = geopandas.read_file('data/target_mask.json')\n",
     "target_mask = target_mask.set_crs(4326,allow_override=True)\n",
     "\n",
     "\n",