created new release

VanLoo-lab · Mar 8, 2018 · f772e09 · f772e09
1 parent 3592bb0
commit f772e09
Show file tree

Hide file tree

Showing 20 changed files with 31 additions and 25 deletions.
diff --git a/ASCAT/DESCRIPTION b/ASCAT/DESCRIPTION
@@ -23,4 +23,4 @@ Depends:
     utils
 License: GPL-3
 LazyLoad: yes
-RoxygenNote: 5.0.1
+RoxygenNote: 6.0.1
diff --git a/ASCAT/NAMESPACE b/ASCAT/NAMESPACE
@@ -17,9 +17,9 @@ export(make_segments)
 export(runASCAT)
 import(RColorBrewer)
 importFrom("grDevices", "adjustcolor", "colorRampPalette", "dev.new",
-             "dev.off", "pdf", "png")
+           "dev.off", "pdf", "png")
 importFrom("graphics", "abline", "axis", "image", "par", "plot",
-             "points", "rect", "text")
+           "points", "rect", "text")
 importFrom("stats", "complete.cases", "cor", "lm", "mad", "median",
-             "na.omit", "runmed", "var")
+           "na.omit", "runmed", "var")
 importFrom("utils", "read.table", "write.table")
diff --git a/ASCAT/man/ascat.GCcorrect.Rd b/ASCAT/man/ascat.GCcorrect.Rd
diff --git a/ASCAT/man/ascat.asmultipcf.Rd b/ASCAT/man/ascat.asmultipcf.Rd
diff --git a/ASCAT/man/ascat.aspcf.Rd b/ASCAT/man/ascat.aspcf.Rd
diff --git a/ASCAT/man/ascat.loadData.Rd b/ASCAT/man/ascat.loadData.Rd
diff --git a/ASCAT/man/ascat.plotAscatProfile.Rd b/ASCAT/man/ascat.plotAscatProfile.Rd
diff --git a/ASCAT/man/ascat.plotGenotypes.Rd b/ASCAT/man/ascat.plotGenotypes.Rd
diff --git a/ASCAT/man/ascat.plotNonRounded.Rd b/ASCAT/man/ascat.plotNonRounded.Rd
diff --git a/ASCAT/man/ascat.plotRawData.Rd b/ASCAT/man/ascat.plotRawData.Rd
diff --git a/ASCAT/man/ascat.plotSegmentedData.Rd b/ASCAT/man/ascat.plotSegmentedData.Rd
diff --git a/ASCAT/man/ascat.plotSunrise.Rd b/ASCAT/man/ascat.plotSunrise.Rd
diff --git a/ASCAT/man/ascat.predictGermlineGenotypes.Rd b/ASCAT/man/ascat.predictGermlineGenotypes.Rd
diff --git a/ASCAT/man/ascat.runAscat.Rd b/ASCAT/man/ascat.runAscat.Rd
diff --git a/ASCAT/man/base.gw.plot.Rd b/ASCAT/man/base.gw.plot.Rd
diff --git a/ASCAT/man/make_segments.Rd b/ASCAT/man/make_segments.Rd
diff --git a/ASCAT/man/predictGermlineHomozygousStretches.Rd b/ASCAT/man/predictGermlineHomozygousStretches.Rd
diff --git a/ASCAT/man/runASCAT.Rd b/ASCAT/man/runASCAT.Rd
diff --git a/ASCAT_2.5.tar.gz b/ASCAT_2.5.tar.gz
diff --git a/man/ASCAT-manual.pdf b/man/ASCAT-manual.pdf