Now the aligned box becomes device copyable now.

[Xiangyu-Hu]

All virtual functions all deleted so that it can be copyable to device.

Here is the summary given by copilot:

This pull request includes several changes aimed at refactoring and renaming classes and files for better clarity and consistency in the codebase. The most significant changes involve renaming complex_shape to complex_geometry, updating the GeometricShapeBox class, and introducing a new GeometricBox class.

Refactoring and Renaming:

• Renamed complex_shape to complex_geometry across multiple files to improve clarity and consistency. (src/for_2D_build/geometries/all_geometries.h [1] src/for_3D_build/geometries/all_geometries.h [2] src/shared/geometries/complex_geometry.cpp [3] src/shared/geometries/complex_geometry.h [4] src/shared/geometries/complex_geometry.h [5] src/shared/geometries/complex_geometry.h [6] src/shared/geometries/transform_geometry.h [7]

Class Updates:

• Updated GeometricShapeBox to inherit from GeometricBox and Shape, and refactored related methods to use GeometricBox methods. (src/for_2D_build/geometries/geometric_shape.cpp [1] src/for_2D_build/geometries/geometric_shape.cpp [2] src/for_2D_build/geometries/geometric_shape.h [3]

New Class Introduction:

• Added a new GeometricBox class to encapsulate the geometric box functionalities, including methods for checking containment and finding the closest point. (src/shared/geometries/geometric_element.cpp [1] src/shared/geometries/geometric_element.h [2]

Body Part Classes:

• Introduced BodyAlignedBoxByParticle and BodyAlignedBoxByCell classes to handle particle and cell tagging within an aligned box. (src/shared/bodies/base_body_part.cpp [1] src/shared/bodies/base_body_part.h [2]

These changes collectively aim to improve the readability, maintainability, and functionality of the codebase.