Updated tests.

YosefLab · May 10, 2023 · c232c8b · c232c8b
1 parent 0e7b0c3
commit c232c8b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/popv/algorithms/_bbknn.py b/popv/algorithms/_bbknn.py
@@ -59,7 +59,7 @@ def __init__(
     def compute_integration(self, adata):
         logging.info("Integrating data with bbknn")
 
-        i(adata, batch_key=self.batch_key, **self.method_dict)
+        sc.external.pp.bbknn(adata, batch_key=self.batch_key, **self.method_dict)
 
     def predict(self, adata):
         logging.info(f'Saving knn on bbknn results to adata.obs["{self.result_key}"]')