SIRVs R10.4 reduced annotation #12

	name: SIRVs R10.4 reduced annotation

	on:
	workflow_dispatch:
	schedule:
	- cron: '0 12 * * 2,6'

	env:
	RUN_NAME: SIRVs.Set4.R10
	LAUNCHER: ${{github.workspace}}/tests/github/run_pipeline.py
	CFG_DIR: /abga/work/andreyp/ci_isoquant/data
	BIN_PATH: /abga/work/andreyp/ci_isoquant/bin/

	jobs:
	launch-runner:
	runs-on:
	labels: [self-hosted]
	name: 'Running IsoQuant and QC'

	steps:
	- name: 'Cleanup'
	run: >
	set -e &&
	shopt -s dotglob &&
	rm -rf *

	- name: 'Checkout'
	uses: actions/checkout@v3
	with:
	fetch-depth: 1

	- name: 'Test'
	shell: bash
	run: \|
	echo "${{env.BIN_PATH}}"
	echo "${{env.BIN_PATH}}" >> $GITHUB_PATH
	echo $GITHUB_PATH
	echo $GITHUB_ENV
	echo "export PATH=\$PATH:${{env.BIN_PATH}}" >> $GITHUB_ENV
	echo ${{env.BIN_PATH}}
	${{env.BIN_PATH}}/gffcompare -h
	gffcompare -h

	- name: 'GitHub runner'
	shell: bash
	run: \|
	echo ${{env.BIN_PATH}} >> $GITHUB_PATH
	python3 ${{env.LAUNCHER}} ${{env.CFG_DIR}}/${{env.RUN_NAME}}.cfg

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