asapdiscovery · JenkeScheen · Dec 14, 2023 · Dec 14, 2023 · Dec 14, 2023 · Dec 14, 2023
diff --git a/.gitmodules b/.gitmodules
@@ -0,0 +1,9 @@
+[submodule "P2_Antiviral_Core/SARS-CoV-2/Mac1/SARS2-mut-fitness"]
+	path = P2_Antiviral_Core/SARS-CoV-2/Mac1/SARS2-mut-fitness
+	url = https://github.com/jbloomlab/SARS2-mut-fitness
+[submodule "P2_Antiviral_Core/SARS-CoV-2/Mpro/SARS2-mut-fitness"]
+	path = P2_Antiviral_Core/SARS-CoV-2/Mpro/SARS2-mut-fitness
+	url = https://github.com/jbloomlab/SARS2-mut-fitness
+[submodule "P2_Antiviral_Core/ZIKV/NS2B-NS3pro/ZIKV_DMS_NS3_EvansLab"]
+	path = P2_Antiviral_Core/ZIKV/NS2B-NS3pro/ZIKV_DMS_NS3_EvansLab
+	url = https://github.com/jbloomlab/ZIKV_DMS_NS3_EvansLab
diff --git a/P2_Antiviral_Core/DENV/NS2B-NS3pro/placeholder b/P2_Antiviral_Core/DENV/NS2B-NS3pro/placeholder
diff --git a/P2_Antiviral_Core/EV-A71/3Cpro/placeholder b/P2_Antiviral_Core/EV-A71/3Cpro/placeholder
diff --git a/P2_Antiviral_Core/EV-A71/Capsid/placeholder b/P2_Antiviral_Core/EV-A71/Capsid/placeholder
diff --git a/P2_Antiviral_Core/EV-D68/3Cpro/placeholder b/P2_Antiviral_Core/EV-D68/3Cpro/placeholder
diff --git a/P2_Antiviral_Core/MERS-CoV/Mpro/placeholder b/P2_Antiviral_Core/MERS-CoV/Mpro/placeholder
diff --git a/P2_Antiviral_Core/README.md b/P2_Antiviral_Core/README.md
@@ -0,0 +1,5 @@
+### Storage of data produced by ASAP's antiviral core
+
+The fitness data stored in this repository is structured into separate folders for each antiviral target that ASAP is pursuing, categorized per viral variant. Each folder contains fitness data for the target (if present) as a `git submodule` that is coupled to an external repository where the data analysis has been performed. 
+
+Note that because SARS-CoV-2 fitness data consists of a phylogenetics analysis this is cross-genome. Because of this the submodules for SARS-CoV-2-Mpro and SARS-CoV-2-Mac1 the same.
diff --git a/P2_Antiviral_Core/SARS-CoV-2/Mac1/SARS2-mut-fitness b/P2_Antiviral_Core/SARS-CoV-2/Mac1/SARS2-mut-fitness
diff --git a/P2_Antiviral_Core/SARS-CoV-2/Mpro/SARS2-mut-fitness b/P2_Antiviral_Core/SARS-CoV-2/Mpro/SARS2-mut-fitness
diff --git a/P2_Antiviral_Core/ZIKV/NS2B-NS3pro/ZIKV_DMS_NS3_EvansLab b/P2_Antiviral_Core/ZIKV/NS2B-NS3pro/ZIKV_DMS_NS3_EvansLab
diff --git a/P3_Data_Core/README.md b/P3_Data_Core/README.md
@@ -0,0 +1,5 @@
+# Note on use of Enhanced Stereochemistry
+
+In order to give the most accurate representation possible of molecular data, enhnaced stereochemistry and [CXSMILES](https://docs.chemaxon.com/display/docs/chemaxon-extended-smiles-and-smarts-cxsmiles-and-cxsmarts.md#src-1806633) are used in the ASAP consortium. 
+
+For a description of this convention, please see the enhanced_stereochemistry_README.pdf document in this repository.
diff --git a/enhanced_stereochemistry_README.pdf → ..._Core/enhanced_stereochemistry_README.pdf b/enhanced_stereochemistry_README.pdf → ..._Core/enhanced_stereochemistry_README.pdf
diff --git a/README.md b/README.md
@@ -1,8 +1,2 @@
-# ASAP_data
-Repository for data generated by the ASAP Discovery Consortium
-
-# Note on use of Enhanced Stereochemistry
-
-In order to give the most accurate representation possible of molecular data, enhnaced stereochemistry and [CXSMILES](https://docs.chemaxon.com/display/docs/chemaxon-extended-smiles-and-smarts-cxsmiles-and-cxsmarts.md#src-1806633) are used in the ASAP consortium. 
-
-For a description of this convention, please see the enhanced_stereochemistry_README.pdf document in this repository.
+# ASAP Data
+Repository for data generated by the ASAP Discovery Consortium.