Update EvidenceQC templates (#763)

* Update EvidenceQC templates * Remove melt_vcfs.
broadinstitute · Jan 2, 2025 · 0f37c11 · 0f37c11
1 parent fde9e1c
commit 0f37c11
Show file tree

Hide file tree

Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/inputs/templates/terra_workspaces/cohort_mode/workflow_configurations/EvidenceQC.json.tmpl b/inputs/templates/terra_workspaces/cohort_mode/workflow_configurations/EvidenceQC.json.tmpl
@@ -8,10 +8,8 @@
   "EvidenceQC.genome_file": "${workspace.genome_file}",
 
   "EvidenceQC.batch": "${this.sample_set_id}",
-  "EvidenceQC.melt_insert_size": "${this.samples.melt_insert_size}",
   "EvidenceQC.counts": "${this.samples.coverage_counts}",
   "EvidenceQC.manta_vcfs": "${this.samples.manta_vcf}",
-  "EvidenceQC.melt_vcfs": "${this.samples.melt_vcf}",
   "EvidenceQC.wham_vcfs": "${this.samples.wham_vcf}",
   "EvidenceQC.scramble_vcfs": "${this.samples.scramble_vcf}",
   "EvidenceQC.samples": "${this.samples.sample_id}"

diff --git a/inputs/templates/test/EvidenceQC/EvidenceQC.json.tmpl b/inputs/templates/test/EvidenceQC/EvidenceQC.json.tmpl
@@ -10,7 +10,7 @@
   "EvidenceQC.batch": {{ test_batch.name | tojson }},
   "EvidenceQC.counts": {{ test_batch.counts | tojson }},
   "EvidenceQC.manta_vcfs": {{ test_batch.manta_vcfs | tojson }},
-  "EvidenceQC.melt_vcfs": {{ test_batch.melt_vcfs | tojson }},
   "EvidenceQC.wham_vcfs": {{ test_batch.wham_vcfs | tojson }},
+  "EvidenceQC.scramble_vcfs": {{ test_batch.scramble_vcf }},
   "EvidenceQC.samples": {{ test_batch.samples | tojson }}
 }