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Merge pull request #958 from cumc/gw_container_update
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Fix a typo in KING
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@gaow
gaow authored Apr 4, 2024
2 parents 151eb92 + 865e980 commit 646fc20
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2 changes: 1 addition & 1 deletion container/README.md
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Expand Up @@ -53,6 +53,7 @@ On occasion, you may see errors that a download or upload has failed while build
| apex | [Link](https://github.com/corbinq/apex) | [Link](https://anaconda.org/dnachun/apex) | apex | 0.2-alpha | dnachun | Other |
| htslib | [Link](http://www.htslib.org/) | [Link](https://anaconda.org/bioconda/htslib) | apex, factor_analysis, bioinfo, methylation, pcatools, pecotmr, quantqtl, tensorqtl | | bioconda | MIT |
| gcta | [Link](https://yanglab.westlake.edu.cn/software/gcta/#Overview) | [Link](https://anaconda.org/bioconda/gcta) | bioinfo | 1.94.1 | bioconda | GPL‑3.0‑only |
| king | [Link](http://people.virginia.edu/~wc9c/KING/) | [Link](https://anaconda.org/bioconda/king) | bioinfo | 2.3.0 | dnachun | GPL‑3.0‑or‑later |
| plink | [Link](https://www.cog-genomics.org/plink2) | [Link](https://anaconda.org/bioconda/plink) | bioinfo | 1.90b6.21 | bioconda | GPL‑3.0‑or‑later |
| plink2 | [Link](https://www.cog-genomics.org/plink/2.0/) | [Link](https://anaconda.org/bioconda/plink2) | bioinfo | 2.00a3.7 | bioconda | GPL‑3.0‑or‑later |
| qtl | [Link](https://pypi.org/project/qtl/) | [Link](https://anaconda.org/dnachun/qtl) | bioinfo | 0.1.9 | dnachun | BSD‑3‑Clause |
Expand All @@ -64,7 +65,6 @@ On occasion, you may see errors that a download or upload has failed while build
| bcftools | [Link](https://samtools.github.io/bcftools/) | [Link](https://anaconda.org/bioconda/bcftools) | bioinfo, apex, fastenloc, pcatools, rare_variation, factor_analysis | 1.17 | bioconda | GPL‑3.0‑or‑later |
| dapars2 | [Link](https://github.com/cumc/xqtl-protocol) | [Link](https://anaconda.org/dnachun/dapars2) | dapars2 | 1 | dnachun | Other |
| samtools | [Link](https://samtools.github.io/samtools/) | [Link](https://anaconda.org/bioconda/samtools) | dapars2, rna_quantification, leafcutter | 1.17 | bioconda | MIT |
| king | [Link](http://people.virginia.edu/~wc9c/KING/) | [Link](https://anaconda.org/bioconda/king) | dnachun | 2.3.0 | bioconda | GPL‑3.0‑or‑later |
| bioconductor-impute | [Link](https://bioconductor.org/packages/3.18/bioc/html/impute.html) | [Link](https://anaconda.org/bioconda/bioconductor-impute) | factor_analysis | 1.76.0 | bioconda | GPL‑2.0‑only |
| bioconductor-mofa2 | [Link](https://bioconductor.org/packages/3.16/bioc/html/MOFA2.html) | [Link](https://anaconda.org/bioconda/bioconductor-mofa2) | factor_analysis | 1.10.0 | bioconda | LGPL‑3.0‑or‑later |
| mofapy2 | [Link](https://anaconda.org/dnachun/mofapy2) | [Link](https://anaconda.org/dnachun/mofapy2) | factor_analysis | 0.7.0 | dnachun | GPL‑3.0‑or‑later |
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1 change: 1 addition & 0 deletions container/bioinfo/bioinfo.yml
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Expand Up @@ -8,6 +8,7 @@ dependencies:
- bcftools=1.17
- gcta=1.94.1
- htslib
- king=2.3.0
- plink=1.90b6.21
- plink2=2.00a3.7
- qtl=0.1.9
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2 changes: 1 addition & 1 deletion container/containers.csv
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Expand Up @@ -3,7 +3,7 @@ apex,https://github.com/corbinq/apex,C/C++,0.2-alpha,63b605e00766141693a69eee6d6
htslib,http://www.htslib.org/,C/C++,,N/A,bioconda,"apex, factor_analysis, bioinfo, methylation, pcatools, pecotmr, quantqtl, tensorqtl",MIT,https://anaconda.org/bioconda/htslib,
gcta,https://yanglab.westlake.edu.cn/software/gcta/#Overview,C/C++,1.94.1,N/A,bioconda,bioinfo,GPL-3.0-only,https://anaconda.org/bioconda/gcta,
plink2,https://www.cog-genomics.org/plink/2.0/,C/C++,2.00a3.7,N/A,bioconda,bioinfo,GPL-3.0-or-later,https://anaconda.org/bioconda/plink2,
king,http://people.virginia.edu/~wc9c/KING/,C/C++,2.3.0,N/A,bioconda,dnachun,GPL-3.0-or-later,https://anaconda.org/bioconda/king,
king,http://people.virginia.edu/~wc9c/KING/,C/C++,2.3.0,N/A,dnachun,bioinfo,GPL-3.0-or-later,https://anaconda.org/bioconda/king,
qtl,https://pypi.org/project/qtl/,Python,0.1.9,N/A,dnachun,bioinfo,BSD-3-Clause,https://anaconda.org/dnachun/qtl,Fix license info
r-bedtoolsr,https://github.com/PhanstielLab/bedtoolsr,R,2.30.0.2,N/A,bioconda,bioinfo,MIT,https://anaconda.org/bioconda/r-bedtoolsr,
r-foreach,https://cran.r-project.org/web/packages/foreach/index.html,R,1.5.2,N/A,conda-forge,bioinfo,Apache-2.0,https://anaconda.org/conda-forge/r-foreach,
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2 changes: 1 addition & 1 deletion container/readme/containers.md
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Expand Up @@ -3,6 +3,7 @@
| apex | [Link](https://github.com/corbinq/apex) | [Link](https://anaconda.org/dnachun/apex) | apex | 0.2-alpha | dnachun | Other |
| htslib | [Link](http://www.htslib.org/) | [Link](https://anaconda.org/bioconda/htslib) | apex, factor_analysis, bioinfo, methylation, pcatools, pecotmr, quantqtl, tensorqtl | | bioconda | MIT |
| gcta | [Link](https://yanglab.westlake.edu.cn/software/gcta/#Overview) | [Link](https://anaconda.org/bioconda/gcta) | bioinfo | 1.94.1 | bioconda | GPL‑3.0‑only |
| king | [Link](http://people.virginia.edu/~wc9c/KING/) | [Link](https://anaconda.org/bioconda/king) | bioinfo | 2.3.0 | dnachun | GPL‑3.0‑or‑later |
| plink | [Link](https://www.cog-genomics.org/plink2) | [Link](https://anaconda.org/bioconda/plink) | bioinfo | 1.90b6.21 | bioconda | GPL‑3.0‑or‑later |
| plink2 | [Link](https://www.cog-genomics.org/plink/2.0/) | [Link](https://anaconda.org/bioconda/plink2) | bioinfo | 2.00a3.7 | bioconda | GPL‑3.0‑or‑later |
| qtl | [Link](https://pypi.org/project/qtl/) | [Link](https://anaconda.org/dnachun/qtl) | bioinfo | 0.1.9 | dnachun | BSD‑3‑Clause |
Expand All @@ -14,7 +15,6 @@
| bcftools | [Link](https://samtools.github.io/bcftools/) | [Link](https://anaconda.org/bioconda/bcftools) | bioinfo, apex, fastenloc, pcatools, rare_variation, factor_analysis | 1.17 | bioconda | GPL‑3.0‑or‑later |
| dapars2 | [Link](https://github.com/cumc/xqtl-protocol) | [Link](https://anaconda.org/dnachun/dapars2) | dapars2 | 1 | dnachun | Other |
| samtools | [Link](https://samtools.github.io/samtools/) | [Link](https://anaconda.org/bioconda/samtools) | dapars2, rna_quantification, leafcutter | 1.17 | bioconda | MIT |
| king | [Link](http://people.virginia.edu/~wc9c/KING/) | [Link](https://anaconda.org/bioconda/king) | dnachun | 2.3.0 | bioconda | GPL‑3.0‑or‑later |
| bioconductor-impute | [Link](https://bioconductor.org/packages/3.18/bioc/html/impute.html) | [Link](https://anaconda.org/bioconda/bioconductor-impute) | factor_analysis | 1.76.0 | bioconda | GPL‑2.0‑only |
| bioconductor-mofa2 | [Link](https://bioconductor.org/packages/3.16/bioc/html/MOFA2.html) | [Link](https://anaconda.org/bioconda/bioconductor-mofa2) | factor_analysis | 1.10.0 | bioconda | LGPL‑3.0‑or‑later |
| mofapy2 | [Link](https://anaconda.org/dnachun/mofapy2) | [Link](https://anaconda.org/dnachun/mofapy2) | factor_analysis | 0.7.0 | dnachun | GPL‑3.0‑or‑later |
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