fix: asv.conf.json defaults

.github/workflows/pythonpackage.yml

@@ -36,7 +36,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install -U build pip twine
-          pip install -e .[doc,test,scrape]
+          pip install -e .[doc,test]
 
       - name: Build and check package
         run: |

.github/workflows/test.yml

@@ -49,7 +49,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -e .[test,scrape]
+          pip install -e .[test]
 
       - name: Cache Test Data
         uses: actions/cache@v4

.gitignore

@@ -192,4 +192,7 @@ downloaded_pdfs/
 results/*
 
 # html
-html/*
+html/*
+
+# envs
+env/*

README.md

@@ -116,7 +116,7 @@ datasets:
 
 ```bash
 # Install development dependencies
-pip install -e .[test,scrape,doc] # testing, scraping of real-world graph data, and documentation
+pip install -e .[test,doc] # testing and documentation
 
 # Run tests
 make test

asv.conf.json

@@ -7,7 +7,7 @@
     "branches": [
         "main"
     ],
-    "environment_type": "virtualenv",
+    "environment_type": "existing",
     "show_commit_url": "https://github.com/dpys/nxbench/commit/",
     "pythons": [
         "3.11"
@@ -24,7 +24,7 @@
                 "2024.2.0"
             ]
         },
-        "env": {
+        "env_nobuild": {
             "NUM_THREAD": [
                 "1",
                 "4",
@@ -50,7 +50,7 @@
         "asv_runner"
     ],
     "build_command": [
-        "python -m pip install ."
+        "PIP_NO_BUILD_ISOLATION=false python -m pip install ."
     ],
     "install_command": [
         "python -m pip install {wheel_file}"

nxbench/benchmarks/benchmark.py

@@ -37,11 +37,13 @@
 available_backends = get_available_backends()
 backends = [
     backend
-    for backend, version_list in config.matrix.get("req", {"networkx": ["3.3"]}).items()
+    for backend, version_list in config.matrix.get(
+        "req", {"networkx": ["3.4.2"]}
+    ).items()
     if backend in available_backends
 ]
 num_thread_values = [
-    int(v) for v in config.matrix.get("env", {}).get("NUM_THREAD", ["1"])
+    int(v) for v in config.matrix.get("env_nobuild", {}).get("NUM_THREAD", ["1"])
 ]
 
 
@@ -196,7 +198,7 @@ def do_benchmark(
         except (ImportError, AttributeError):
             logger.exception(f"Function not available for backend {backend}")
             logger.debug(traceback.format_exc())
-            self.teardown(dataset_name, backend)
+            self.teardown(dataset_name, backend, num_thread)
             return {"execution_time": float("nan"), "memory_used": float("nan")}
 
         try:
@@ -234,11 +236,11 @@ def do_benchmark(
             logger.debug(traceback.format_exc())
             metrics = {"execution_time": float("nan"), "memory_used": float("nan")}
         finally:
-            self.teardown(dataset_name, backend)
+            self.teardown(dataset_name, backend, num_thread)
 
         return metrics
 
-    def teardown(self, dataset_name: str, backend: str):
+    def teardown(self, dataset_name: str, backend: str, num_thread: int = 1):
         """Reset any backend-specific configurations to avoid state leakage."""
         if backend == "parallel":
             nx.config.backends.parallel.active = False

nxbench/benchmarks/utils.py

@@ -67,7 +67,7 @@ def load_default_config() -> BenchmarkConfig:
             "nx-parallel": ["0.3"],
             "python-graphblas": ["2024.2.0"],
         },
-        "env": {
+        "env_nobuild": {
             "NUM_THREAD": ["1", "4", "8"],
         },
     }

pyproject.toml

@@ -32,21 +32,19 @@ dependencies = [
     "pydantic >=2.8",
     "setuptools >=75.1",
     "nest-asyncio >=1.6",
-    "pytest-asyncio >= 0.24.0",
-    "asv>=0.6.4",
+    "asv >=0.6.4",
     "dash >= 2.18.1",
-    "dash-bootstrap-components >= 1.6.0"
-]
-
-[project.optional-dependencies]
-cuda = ["cugraph"]
-
-scrape = ["aiohttp >= 3.9.5",
+    "dash-bootstrap-components >=1.6.0",
+    "aiohttp >= 3.9.5",
     "aiofiles >= 24.1.0",
     "chardet >= 4.0.0",
     "beautifulsoup4 >= 4.12.3",
     "multidict >= 6.0.5",
-    "yarl >= 1.9.4"]
+    "yarl >= 1.9.4"
+]
+
+[project.optional-dependencies]
+cuda = ["cugraph"]
 
 test = [
     'pre-commit>=3.8.0',
@@ -60,6 +58,7 @@ test = [
     'pytest-xdist>=1.32.0',
     'pytest-metadata>=2.0.2',
     'pytest-env>=1.1.5',
+    "pytest-asyncio >= 0.24.0",
     'coverage>=7.6.1',
     'build>=1.2.2',
     'isort>=5.13.2'