Merge branch 'hotfix/v1.0.2'

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: scigenex
 Type: Package
 Title: The scigenex package (Single-Cell Informative GENe Explorer)
-Version: 1.0.1
+Version: 1.0.2
 Date: 2020-07-22
 Author: J. Bavais, Aurelie Bergon, Fabrice Lopez, Julien Textoris, Samuel Granjeaud, Lionel Spinelli and Denis Puthier
 Maintainer: J. Bavais <[email protected]>

R/dbfmcl_main.R

@@ -804,7 +804,7 @@ DBFMCL <- function(data = NULL,
                    filename = NULL, 
                    path = ".",
                    output_path = ".",
-                   optional_output = FALSE,
+                   optional_output = TRUE,
                    mcl_cmd_line=FALSE,
                    mcl_cmd_line_threads=1,
                    name = NULL,
@@ -1046,7 +1046,7 @@ DBFMCL <- function(data = NULL,
 DBF <- function(data,
                 output_path = ".",
                 name = NULL,
-                optional_output = FALSE,
+                optional_output = TRUE,
                 distance_method = c("spearman", "pearson", "euclidean"),
                 silent = FALSE,
                 k = 100,
@@ -1088,7 +1088,7 @@ DBF <- function(data,
         # Character string containing all the options refered in the fprint_selected function in the C++ code
         options <- c( "dists,thresholds")
       } else {
-        options <- FALSE
+        options <- ""
       }
 
 

changelog.md

@@ -1,7 +1,12 @@
 
 # Changelog
 
-## v2.0.1
+## v1.0.2
+
+*   Fix fprint_selected function in C code byt changing type of len varibale to size_t
+*   Set default optional_output parameter of DBF and DBFMCL function to TRUE
+
+## v1.0.1
 
 ### Bug Fixes
 

src/dbf.c

@@ -520,7 +520,7 @@ void fprint_selected( char *options, char *fr, int verbose,
 	char *option = NULL;
 	char *outputFN = NULL;
 	FILE *fd;
-	char len = 0;
+	size_t len = 0;
 
 	// Output file naming and opening
 	len = strlen( fr ) + 30;