Remove MCL from dependencies + add import functions.

dputhier · Nov 9, 2021 · 970b8f0 · 970b8f0
1 parent e18857c
commit 970b8f0
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Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,12 +1,12 @@
 Package: scigenex
 Type: Package
 Title: The scigenex package (Single-Cell Informative GENe Explorer)
-Version: 1.0.2
+Version: 1.1.2
 Date: 2020-07-22
 Author: J. Bavais, Aurelie Bergon, Fabrice Lopez, Julien Textoris, Samuel Granjeaud, Lionel Spinelli and Denis Puthier
 Maintainer: J. Bavais <[email protected]>
 Depends: R (>= 4.0.0), methods, grDevices, stats, utils, dplyr, ggplot2, reshape2, magrittr, testthat, igraph, MCL, iheatmapr
-Imports: reshape2, ggplot2, magrittr, dplyr, igraph, MCL, gprofiler2
+Imports: reshape2, ggplot2, magrittr, dplyr, igraph, gprofiler2, plotly
 Collate: dbfmcl_main.R zzz.R import_package.R
 Description: The scigenex package (Single-Cell Informative GENe Explorer) proposes a set of functions to extract informative genes from a scRNA-seq experiment, search and store clusters of co-expressed genes. These clusters are annotated and can be mapped onto UMAP or t-SNE diagram to functionally annotate cell populations.
 biocViews: Clustering, Classification, Transcriptomics, SingleCell, ReportWriting, GeneRegulation

diff --git a/NAMESPACE b/NAMESPACE
@@ -61,6 +61,7 @@ importFrom(methods,slotNames)
 importFrom(plotly,layout)
 importFrom(reshape2,melt)
 importFrom(stats,as.dist)
+importFrom(stats,cor)
 importFrom(stats,dist)
 importFrom(stats,hclust)
 importFrom(stats,heatmap)

diff --git a/R/import_package.R b/R/import_package.R
@@ -6,7 +6,7 @@
 #' 
 #' @importFrom methods new slot slotNames setClass signature setMethod setGeneric
 #' @importFrom grDevices colorRampPalette
-#' @importFrom stats sd dist hclust heatmap median rnorm setNames as.dist hclust
+#' @importFrom stats sd dist hclust heatmap median rnorm setNames as.dist hclust cor
 #' @importFrom utils object.size read.table write.table read.csv
 #' @importFrom dplyr summarise group_by distinct
 #' @importFrom ggplot2 ggplot geom_line aes geom_tile geom_vline geom_text