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Going scigenex
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dputhier committed Aug 27, 2021
1 parent 79af845 commit cb78bdb
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Package: scigenex
Type: Package
Title: The scigenex package (Single-Cell Informative GENe Explorer)
Version: 0.1.8
Version: 1.0.0
Date: 2020-07-22
Author: J. Bavais, Aurelie Bergon, Fabrice Lopez, Julien Textoris, Samuel Granjeaud, Lionel Spinelli and Denis Puthier
Maintainer: J. Bavais <[email protected]>
Depends: R (>= 3.6.1), methods, testthat
Imports: reshape2, ggplot2, magrittr, dplyr, igraph, MCL
Collate: dbfmcl_main.R zzz.R
Description: The scigenex package (Single-Cell Informative GENe Explorer) proposes a set of functions to extract informative genes from a scRNA-seq experiment and search for clusters of co-expressed genes. These clusters are annotated and can be mapped onto UMAP or t-SNE diagram to functionally annotate cell populations.
Description: The scigenex package (Single-Cell Informative GENe Explorer) proposes a set of functions to extract informative genes from a scRNA-seq experiment, search and store clusters of co-expressed genes. These clusters are annotated and can be mapped onto UMAP or t-SNE diagram to functionally annotate cell populations.
biocViews: Clustering, Classification, Transcriptomics, SingleCell, ReportWriting, GeneRegulation
License: GPL-3
Suggests: RColorBrewer
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7 changes: 2 additions & 5 deletions NAMESPACE
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if(.Platform$OS.type == "windows"){
useDynLib("dbfml.dll")
useDynLib("scigenex.dll")
}else{
useDynLib("dbfmcl")
useDynLib("scigenex")
}

importClassesFrom(methods, character, list, matrix, vector)

importMethodsFrom(methods, show)



importFrom("grDevices", "colorRampPalette")
importFrom("methods", "new", "slot", "slotNames")
importFrom("stats", "sd", dist, hclust, heatmap, median, rnorm)
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2 changes: 1 addition & 1 deletion R/zzz.R
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# .First.lib <- function(lib,pkg) {
# library.dynam("dbfmcl",pkg,lib)
# library.dynam("scigenex",pkg,lib)
# }

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