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updated caiman description
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EricThomson authored Nov 30, 2023
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external_url: https://github.com/flatironinstitute/CaImAn
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Recent advances in calcium imaging acquisition techniques are creating datasets of the order of Terabytes/week. Memory and computationally efficient algorithms are required to analyze in reasonable amount of time terabytes of data. This project implements a set of essential methods required in the calcium imaging movies analysis pipeline. Fast and scalable algorithms are implemented for motion correction, movie manipulation, and source and spike extraction. CaImAn also contains some routines for the analyisis of behavior from video cameras. In summary, CaImAn provides a general purpose tool to handle large movies, with special emphasis on tools for two-photon and one-photon calcium imaging and behavioral datasets.
CaImAn provides a full pipeline for analyzing single-cell optical physiology data -- both calcium and voltage imaging data. Given raw data, CaImAn provides algorithms for motion-correction and the extraction of the locations of neural components and their corresponding calcium/voltage traces. It also includes extensive tools for visualizing data, results, and quality control.

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