Merge pull request #122 from gaelforget/seaduck

Seaduck

examples/seaduck.jl

@@ -0,0 +1,28 @@
+
+using ClimateModels, PyCall, Conda
+
+"""
+    demo_seaduck()
+
+Example copied from [seaduck documentation](https://macekuailv.github.io/seaduck/one_min_guide.html)
+
+```
+using ClimateModels, PyCall, Conda
+include("examples/seaduck.jl")
+demo_seaduck()
+"""
+demo_seaduck() = begin
+  ClimateModels.conda(:seaduck)
+  sd=ClimateModels.pyimport(:seaduck)
+
+  ds = sd.utils.get_dataset("ecco")
+
+  longitude = -11.0
+  latitude = 71.0
+  depth = -5.0
+  time = sd.utils.convert_time("1992-02")
+
+  time = sd.utils.convert_time("1992-02")
+  s = sd.OceInterp(ds, "SALT", longitude, latitude, depth, time)
+end
+

examples/seaduck/README.md

@@ -0,0 +1,28 @@
+
+Documentation : https://macekuailv.github.io/seaduck/intro.html
+
+## add packages
+
+```
+pip install seaduck
+pip install pooch
+pip install zarr
+pip install matplotlib
+pip install cartopy
+
+git clone https://github.com/MaceKuailv/seaduck
+```
+
+## then run 
+
+```
+./docs/one_min_guide.ipynb
+./docs/idealize_test/ver_stream.ipynb
+./docs/idealize_test/tilted_stream.ipynb
+./docs/idealize_test/hor_stream.ipynb
+./docs/notebook/global_ECCO.ipynb
+./docs/notebook/AVISO.ipynb
+./docs/notebook/topology_tutorial.ipynb
+```
+
+

ext/ClimateModelsCondaExt.jl

@@ -6,6 +6,16 @@ function ClimateModels.conda(flag=:fair)
     if flag==:fair
         Conda.pip_interop(true)
         Conda.pip("install", "fair==1.6.4")
+    elseif flag==:seaduck
+        Conda.pip("install","numpy")
+        Conda.pip("install","xarray")
+        Conda.pip("install","dask")
+        Conda.pip_interop(true)
+        Conda.pip("install","seaduck")
+        Conda.pip("install","pooch")
+        Conda.pip("install","zarr")
+#        Conda.pip("install","matplotlib")
+#        Conda.pip("install","cartopy")
     end
 end
 

ext/ClimateModelsPyCallExt.jl

@@ -8,6 +8,8 @@ function ClimateModels.pyimport(flag=:fair)
         forward=pyimport("fair.forward")
         RCPs=pyimport("fair.RCPs")
         fair,forward,RCPs
+    elseif flag==:seaduck
+        sd=pyimport("seaduck")
     else
         @warn "unknown flag value   "
     end