NER Benchmark Script#148

Merged

bgyori merged 19 commits intogyorilab:masterfrom galileosteinberg:ner-benchmark

Jul 26, 2024

+587-39

Commits on Jul 25, 2024

Initial implementation of NER benchmark.
galileosteinberg
committed
dded implementation of a stoplist for NER, set membership for for matching reference annotations, counter for most common false positives in bioid_ner_benchmark.py. Implemented a condition in the N…
galileosteinberg
committed
Make annotation return a list of scored matches

bgyori
authored and
galileosteinberg
committed
Commit with changes to gilda evaluation logic. Returns metrics for both top matches and all matches.
galileosteinberg
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Committing changes to app.py with NER class.
galileosteinberg
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Modified to work with annotation objects
galileosteinberg
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Changes to app.py
galileosteinberg
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Annotate not accepting spans <= 1, added progress bars
galileosteinberg
committed
Extended stopwords; moved stop words file to resources and logic into ner module
galileosteinberg
committed