changed numpy.float to float for compatibility with newer numpy

hakyimlab · Nov 28, 2023 · 4b3ad95 · 4b3ad95
1 parent aca7516
commit 4b3ad95
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/software/Predict.py b/software/Predict.py
@@ -192,7 +192,7 @@ def run(args):
                 dosage = e[GF.FIRST_DOSAGE:]
                 if allele_align == -1:
                     dosage = tuple(map(lambda x: 2 - x, dosage))
-                dosage = numpy.array(dosage, dtype=numpy.float)
+                dosage = numpy.array(dosage, dtype=float)
 
                 snps_found.add(var_id)
 

diff --git a/software/metax/genotype/BGENGenotype.py b/software/metax/genotype/BGENGenotype.py
@@ -54,9 +54,9 @@ def bgen_file_geno_lines(file, variant_mapping = None, force_colon = False, use_
 
         v = bgen["genotype"][variant.Index].compute()
         if v["phased"]:
-            d = numpy.apply_along_axis(lambda x: x[1] + x[3], 1, numpy.array(v["probs"], dtype=numpy.float))
+            d = numpy.apply_along_axis(lambda x: x[1] + x[3], 1, numpy.array(v["probs"], dtype=float))
         else:
-            d = numpy.apply_along_axis(lambda x: x[1] + x[2] * 2, 1, numpy.array(v["probs"], dtype=numpy.float))
+            d = numpy.apply_along_axis(lambda x: x[1] + x[2] * 2, 1, numpy.array(v["probs"], dtype=float))
 
         #e = bgen_reader.allele_expectation(bgen, variant.Index)
         #d2 = bgen_reader.compute_dosage(e, alt=1)